Publications Overview

1.

Journal Article

Schneider, S.; Kühlbrandt, W.; Yildiz, Ö.: Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism. Structure 32 (7), pp. 979 - 988.e4 (2024)

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2.

Journal Article

Yadav, S.; Centola, M.; Glaesmann, M.; Pogoryelov, D.; Ladig, R.; Heilemann, M.; Rai, L. C.; Yildiz, Ö.; Schleiff, E.: Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium. Nature Communications 13 (1), 1690 (2022)

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3.

Journal Article

Centola, M.; van Pee, K.; Betz, H.; Yildiz, Ö.: Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases. Nature Communications 12 (1), 6982 (2021)

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4.

Journal Article

Klusch, N.; Senkler, J.; Yildiz, Ö.; Kühlbrandt, W.; Braun, H.-P.: A ferredoxin bridge connects the two arms of plant mitochondrial complex I. The Plant Cell 33 (6), pp. 2072 - 2091 (2021)

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5.

Journal Article

Yadav, S.; Centola, M.; Yildiz, Ö.; Pogoryelov, D.; Rai, L. C.; Schleiff, E.: Purification and Preliminary X-Ray Crystallographic Analysis of the Peptidyl-Prolyl cis-trans Isomerase Alr5059 from Anabaena sp. PCC 7120. Crystallography Reports 65 (7), pp. 1226 - 1230 (2020)

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6.

Journal Article

Ngo, G.; Centola, M.; Krasnoselska, G.; Pogoryelov, D.; Yildiz, Ö.; Schleiff, E.: LptC from Anabaena sp. PCC 7120: Expression, purification and crystallization. Protein Expression and Purification 175, 105689 (2020)

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7.

Journal Article

Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Reply to Desikan et al.: Micelle formation among various mechanisms of toxin pore formation. Proceedings of the National Academy of Sciences of the United States of America 117 (10), pp. 5109 - 5110 (2020)

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8.

Journal Article

Warnau, J.; Wöhlert, D.; Okazaki, K.-I.; Yildiz, Ö.; Gamiz-Hernandez, A. P.; Kaila, V. R. I.; Kühlbrandt, W.; Hummer, G.: Ion Binding and Selectivity of the Na⁺/H⁺ Antiporter MjNhaP1 from Experiment and Simulation. The Journal of Physical Chemistry B 124 (2), pp. 336 - 344 (2020)

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9.

Journal Article

Vögele, M.; Bhaskara, R.; Mulvihill, E.; van Pee, K.; Yildiz, Ö.; Kühlbrandt, W.; Müller, D. J.; Hummer, G.: Membrane perforation by the pore-forming toxin pneumolysin. Proceedings of the National Academy of Sciences of the United States of America 116 (27), pp. 13352 - 13357 (2019)

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10.

Journal Article

Murphy, B. J.; Klusch, N.; Langer, J. D.; Mills, D.; Yildiz, Ö.; Kühlbrandt, W.: Rotary substates of mitochondrial ATP synthase reveal the basis of flexible F₁-F_o coupling. Science 364 (6446), eaaw9128, p. 1155 (2019)

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11.

Journal Article

Yilmaz, I.; Yildiz, Ö.; Korkmaz, F.: Structural properties of an engineered outer membrane protein G mutant, OmpG-16SL, investigated with infrared spectroscopy. Journal of Biomolecular Structure and Dynamics 37 (2019)

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12.

Journal Article

Okazaki, K.-i.; Wöhlert, D.; Warnau, J.; Jung, H.; Yildiz, Ö.; Kühlbrandt, W.; Hummer, G.: Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting. Nature Communications 10, 1742 (2019)

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13.

Journal Article

Klusch, N.; Murphy, B. J.; Mills, D.; Yildiy, Ö.; Kühlbrandt, W.: Structural basis of proton translocation and force generation in mitochondrial ATP synthase. eLife 6, e33274 (2017)

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14.

Journal Article

van Pee, K.; Neuhaus, A.; D'Imprima, E.; Mills, D. J.; Kühlbrandt, W.; Yildiz, Ö.: CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin. eLife 6, e23644 (2017)

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15.

Journal Article

Weston, C. E.; Krämer, A.; Colin, F.; Yildiz, Ö.; Baud, M. G. J.; Meyer-Almes, F.-J.; Fuchter, M. J.: Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors. ACS Infect. Dis. 3 (2), pp. 152 - 161 (2017)

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16.

Journal Article

Călinescu, O.; Linder, M.; Wöhlert, D.; Yildiz, Ö.; Kühlbrandt, W.; Fendler, K.: Electrogenic Cation Binding in the Electroneutral Na⁺/H⁺ Antiporter of Pyrococcus abyssi. The Journal of Biological Chemistry 291 (52), pp. 26786 - 26793 (2016)

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17.

Journal Article

Krämer, A.; Wagner, T.; Yildiz, Ö.; Meyer-Almes, F.-J.: Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa. Biochemistry 55 (49), pp. 6858 - 6868 (2016)

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18.

Journal Article

van Pee, K.; Mulvihill, E.; Müller, D. J.; Yildiz, Ö.: Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae. Nano Letters 16 (12), pp. 7915 - 7924 (2016)

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19.

Journal Article

Wöhlert, D.; Grötzinger, M. J.; Kühlbrandt, W.; Yildiz, Ö.: Mechanism of Na⁺-dependent citrate transport from the structure of an asymmetrical CitS dimer. eLife 4, e09375 (2015)

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20.

Journal Article

Korkmaz, F.; van Pee, K.; Yildiz, Ö.: IR-spectroscopic characterization of an elongated OmpG mutant. Archives of Biochemistry and Biophysics 576, pp. 73 - 79 (2015)

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21.

Journal Article

Mulvihill, E.; van Pee, K.; Mari, S. A.; Müller, D. J.; Yildiy, Ö.: Directly Observing the Lipid-Dependent Self-Assembly and Pore-Forming Mechanism of the Cytolytic Toxin Listeriolysin O. Nano Letters 15, pp. 6965 - 6973 (2015)

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22.

Journal Article

Preiss, L.; Langer, J. D.; Yildiz, Ö.; Eckhardt-Strelau, L.; Guillemont, J. E. G.; Koul, A.; Meier, T.: Structure of the mycobacterial ATP synthase F_o rotor ring in complex with the anti-TB drug bedaquiline. Science Advances 1 (4), pp. 1 - 8 (2015)

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23.

Journal Article

Paulino, C.; Wöhlert, D.; Kapotova, E.; Yildiz, Ö.; Kühlbrandt, W.: Structure and transport mechanism of the sodium/proton antiporter MjNhaP1. eLife 3, e03583 (2014)

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24.

Journal Article

Wöhlert, D.; Kühlbrandt, W.; Yildiz, Ö.: Structure and substrate ion binding in the sodium/proton antiporter PaNhaP. eLife 3, e03579 (2014)

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25.

Journal Article

Aktas, M.; Köster, S.; Kizilirmak, S.; Casanova, J. C.; Betz, H.; Fritz, C.; Moser, R.; Yildiz, Ö.; Narberhaus, F.: Enzymatic properties and substrate specificity of a bacterial phosphatidylcholine synthase. The FEBS Journal 281 (15), pp. 3523 - 3541 (2014)

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26.

Journal Article

Preiss, L.; Langer, J. D.; Hicks, D. B.; Liu, J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring ion binding site of the ATP synthase from Bacillus pseudofirmus OF4 is adapted to alkaliphilic lifestyle. Molecular Microbiology 92 (5), pp. 973 - 984 (2014)

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27.

Journal Article

Daum, B.; Quax, T. E. F.; Sachse, M.; Mills, D. J.; Reimann, J.; Yildiz, Ö.; Häder, S.; Saveanu, C.; Forterre, P.; Albers, S.-V. et al.; Kühlbrandt, W.; Prangishvili, D.: Self-assembly of the general membrane-remodeling protein PVAP into sevenfold virus-associated pyramids. Proceedings of the National Academy of Sciences of the United States of America 111 (10), pp. 3829 - 3834 (2014)

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28.

Journal Article

Matthies, D.; Zhou, W.; Klyszejko, A. L.; Anselmi, C.; Yildiz, Ö.; Brandt, K.; Müller, V.; Faraldo-Gómez, J. D.; Faraldo-Gómez, J. D.; Meier, T.: High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na⁺-coupled ATP synthase. Nature Communications 5, 5286 (2014)

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29.

Journal Article

Koshy, C.; Schweikhard, E. S.; Gärtner, R. M.; Perez, C.; Yildiz, Ö.; Ziegler, C.: Structural evidence for functional lipid interactions in the betaine transporter BetP. The EMBO Journal 32 (23), pp. 3096 - 3105 (2013)

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30.

Journal Article

Schulz, S.; Iglesias-Cans, M.; Krah, A.; Yildiz, Ö.; Leone, V.; Matthies, D.; Cook, G. M.; Faraldo-Gómez, J. D.; Meier, T.: A New Type of Na⁺-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif. PLoS Biology 11 (6), e1001596, pp. 1 - 12 (2013)

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31.

Journal Article

Preiss, L.; Klyszejko, A. L.; Hicks, D. B.; Liu, J.; Fackelmayer, O. J.; Yildiz, Ö.; Krulwich, T. A.; Meier, T.: The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4. Proceedings of the National Academy of Sciences of the United States of America 110 (19), pp. 7874 - 7879 (2013)

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32.

Journal Article

Perez, C.; Koshy, C.; Yildiz, Ö.; Ziegler, C.: Alternating-access mechanism in conformationally asymmetric trimers of the betaine transporter BetP. Nature 490, pp. 126 - 130 (2012)

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33.

Journal Article

Korkmaz, F.; Köster, S.; Yildiz, Ö.; Mäntele, W.: In situ opening/closing of OmpG from E. coli and the splitting of β-sheet signals in ATR–FTIR spectroscopy. Spectrochimica Acta, Part A: Molecular and Biomolecular Spectroscopy 91, pp. 395 - 401 (2012)

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34.

Journal Article

Köster, S.; Pavkov-Keller, T.; Kühlbrandt, W.; Yildiz, Ö.: Structure of Human Na⁺/H⁺ Exchanger NHE₁ Regulatory Region in Complex with Calmodulin and Ca²⁺. The Journal of Biological Chemistry 286 (47), pp. 40954 - 40961 (2011)

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35.

Journal Article

Damaghi, M.; Köster, S.; Bippes, C. A.; Yildiz, Ö.; Müller, D. J.: One β Hairpin Follows the Other: Exploring Refolding Pathways and Kinetics of the Transmembrane β-Barrel Protein OmpG. Angewandte Chemie, International Edition in English 50 (32), pp. 7422 - 7424 (2011)

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36.

Journal Article

Goswami, P.; Paulino, C.; Hizlan, D.; Vonck, J.; Yildiz, Ö.; Kühlbrandt, W.: Structure of the archaeal Na⁺/H⁺ antiporter NhaP1 and functional role of transmembrane helix 1. The EMBO Journal 30 (2), pp. 439 - 449 (2011)

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37.

Journal Article

Damaghi, M.; Sapra, K. T.; Köster, S.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: Dual energy landscape: The functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape. Proteomics 10 (23), pp. 4151 - 4162 (2010)

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38.

Journal Article

Pogoryelov, D.; Krah, A.; Langer, J. D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: Microscopic rotary mechanism of ion translocation in the F_o complex of ATP synthases. Nature Chemical Biology 6, pp. 891 - 899 (2010)

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39.

Journal Article

Korkmaz-Özkan, F.; Köster, S.; Kühlbrandt, W.; Mäntele, W.; Yildiz, Ö.: Correlation between the OmpG Secondary Structure and Its pH-Dependent Alterations Monitored by FTIR. Journal of Molecular Biology 401 (1), pp. 56 - 67 (2010)

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40.

Journal Article

Preiss, L.; Yildiz, Ö.; Hicks, D. B.; Krulwich, T. A.; Meier, T.: A New Type of Proton Coordination in an F₁F_o-ATP Synthase Rotor Ring. PLoS Biology 8 (8), e1000443 (2010)

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41.

Journal Article

Damaghi, M.; Bippes, C.; Köster, S.; Yildiz, Ö.; Mari, S. A.; Kühlbrandt, W.; Muller, D. J.: pH-Dependent Interactions Guide the Folding and Gate the Transmembrane Pore of the β-Barrel Membrane Protein OmpG. Journal of Molecular Biology 397 (4), pp. 878 - 882 (2010)

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42.

Journal Article

Mari, S. A.; Köster, S.; Bippes, C. A.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: pH-Induced Conformational Change of the β-Barrel-Forming Protein OmpG Reconstituted into Native E. coli Lipids. Journal of Molecular Biology 396 (3), pp. 610 - 616 (2010)

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43.

Journal Article

Sapra, K. T.; Damaghi, M.; Köster, S.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: One β Hairpin after the Other: Exploring Mechanical Unfolding Pathways of the Transmembrane β-Barrel Protein OmpG. Angewandte Chemie, International Edition in English 48 (44), pp. 8306 - 8308 (2009)

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44.

Journal Article

Pogoryelov, D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: High-resolution structure of the rotor ring of a proton-dependent ATP synthase. Nature Structural and Molecular Biology 16 (10), pp. 1068 - 1073 (2009)

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45.

Journal Article

Köster, S.; Wehner, M.; Herrmann, C.; Kühlbrandt, W.; Yildiz, Ö.: Structure and Function of the FeoB G-Domain from Methanococcus jannaschii. Journal of Molecular Biology 392 (2), pp. 405 - 419 (2009)

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46.

Journal Article

Köster, S.; Kühlbrandt, W.; Yildiz, Ö.: Purification, crystallization and preliminary X-ray diffraction analysis of the FeoB G domain from Methanococcus jannaschii. Acta Crystallographie Section F Structural Biology and Crystallization Communications F65 (7), pp. 684 - 687 (2009)

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47.

Journal Article

Korkmaz, F.; Köster, S.; Yildiz, Ö.; Mäntele, W.: The Role of Lipids for the Functional Integrity of Porin: An FTIR Study Using Lipid and Protein Reporter Groups. Biochemistry 47, pp. 12126 - 12134 (2008)

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48.

Journal Article

Stieglitz, B.; Bee, C.; Schwarz, D.; Yildiz, Ö.; Moshnikova, A.; Khokhlatchev, A.; Herrmann, C.: Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II. The EMBO Journal 27 (14), pp. 1995 - 2005 (2008)

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49.

Journal Article

Yildiz, Ö.; Kalthoff, C.; Raunser, S.; Kühlbrandt, W.: Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake. The EMBO Journal 26 (2), pp. 589 - 599 (2007)

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50.

Journal Article

Yildiz, O.; Vinothkumar, K. R.; Goswami, P.; Kühlbrandt, W.: Structure of the monomeric outer-membrane porin OmpG in the open and closed conformation. The EMBO Journal 25, pp. 3702 - 3713 (2006)

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Publications of Özkan Yildiz

Journal Article (50)

Book Chapter (1)