Max Planck Institute of Biophysics

Publications of Eberhard Warkentin

All genres

Journal Article (49)

1.

Journal Article

Joshi, T.; Demmer, U.; Schneider, C.; Glaser, T.; Warkentin, E.; Ermler, U.; Mack, M.: The phosphatase RosC from Streptomyces davaonensis is used for roseoflavin biosynthesis and has evolved to largely prevent dephosphorylation of the important cofactor riboflavin-5'-phosphate. Journal of Molecular Biology 436 (20), 168734 (2024)

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2.

Journal Article

Huang, G.; Wagner, T.; Demmer, U.; Warkentin, E.; Ermler, U.; Shima, S.: The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase. Journal of Molecular Biology (London) 432 (7), pp. 2042 - 2054 (2020)

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3.

Journal Article

Liu, X.; Zhao, X.; Na, R.; Li, L.; Warkentin, E.; Witt, J.; Lu, X.; Yu, Y.; Wei, Y.; Peng, G. et al.; Li, Y.; Wang, J.: The structure differences of Japanese encephalitis virus SA14 and SA14-14-2 E proteins elucidate the virulence attenuation mechanism. Protein and Cell 10 (2), pp. 149 - 153 (2019)

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4.

Journal Article

Liu, W.; Liu, A.; Gao, H.; Wang, Q.; Wang, L.; Warkentin, E.; Rao, Z.; Michel, H.; Peng, G.: Structural properties of the peroxiredoxin AhpC2 from the hyperthermophilic eubacterium Aquifex aeolicus. Biochimica et Biophysica Acta (BBA) - General Subjects 1862 (12), pp. 2797 - 2805 (2018)

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5.

Journal Article

Jiang, S.; Wang, L.; Huang, M.; Jia, Z.; Weinert, T.; Warkentin, E.; Liu, C.; Song, X.; Zhang, H.; Witt, J. et al.; Qiu, L.; Peng, G.; Song, L.: DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum. Frontiers in immunology 8, 1607 (2017)

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6.

Journal Article

Warkentin, E.; Weidenweber, S.; Schühle, K.; Demmer, U.; Heider, J.; Ermler, U.: A rare polyglycine type II-like helix motif in naturally occurring proteins. Proteins: Structure, Function, and Bioinformatics 85 (11), pp. 2017 - 2023 (2017)

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7.

Journal Article

Weidenweber, S.; Schühle, K.; Demmer, U.; Warkentin, E.; Ermler, U.; Heider, J.: Structure of the acetophenone carboxylase core complex: prototype of a new class of ATP-dependent carboxylases/hydrolases. Scientific Reports 7, 39674 (2017)

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8.

Journal Article

Kohlstädt, M.; Buschmann, S.; Xie, H.; Resemann, A.; Warkentin, E.; Langer, J. D.; Michel, H.: Identification and characterization of the novel subunit CcoM in the cbb₃-cytochrome c oxidase from Pseudomonas stutzeri ZoBell. mBio 7 (7), pp. 1 - 9 (2016)

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9.

Journal Article

Rekittke, I.; Warkentin, E.; Jomaa, H.; Ermler, U.: Structure of the GcpE-HMBPP complex from Thermus thermophilius. Biochemical and Biophysical Research Communications 458 (2), pp. 246 - 250 (2015)

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10.

Journal Article

Poppe, J.; Warkentin, E.; Demmer, U.; Kowalewski, B.; Dierks, T.; Schneider, K.; Ermler, U.: Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein. Journal of Inorganic Biochemistry 138, pp. 122 - 128 (2014)

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11.

Journal Article

Vitt, S.; Ma, K.; Warkentin, E.; Moll, J.; Pierik, A. J.; Shima, S.; Ermler, U.: The F₄₂₀-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member. Journal of Molecular Biology (London) 426 (15), pp. 2813 - 2826 (2014)

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12.

Journal Article

Rekittke, I.; Olkhova, E.; Wiesner, J.; Demmer, U.; Warkentin, E.; Jomaa, H.; Ermler, U.: Structure of the (E)-4-hydroxy-3-methyl-but-2-enyl-diphosphate reductase from Plasmodium falciparum. FEBS Letters 587 (24), pp. 3968 - 3972 (2013)

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13.

Journal Article

Parey, K.; Demmer, U.; Warkentin, E.; Wynen, A.; Ermler, U.; Dahl, C.: Structural, Biochemical and Genetic Characterization of Dissimilatory ATP Sulfurylase from Allochromatium vinosum. PLoS One 8 (9), p. e74707 - e74707 (2013)

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14.

Journal Article

Tamura, H.; Salomone-Stagni, M.; Fujishiro, T.; Warkentin, E.; Meyer-Klaucke, W.; Ermler, U.; shima, S.: Crystal Structures of [Fe]-Hydrogenase in Complex with Inhibitory Isocyanides: Implications for the H₂-Activation Site. Angewandte Chemie, International Edition in English 52 (37), pp. 9656 - 9659 (2013)

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15.

Journal Article

Demmer, U.; Warkentin, E.; Srivastava, A.; Kockelkorn, D.; Pötter, M.; Marx, A.; Fuchs, G.; Ermler, U.: Structural Basis for a Bispecific NADP⁺ and CoA Binding Site in an Archaeal Malonyl-Coenzyme A Reductase. The Journal of Biological Chemistry 288 (9), pp. 6363 - 6370 (2013)

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16.

Journal Article

El Hammi, E.; Warkentin, E.; Demmer, U.; Marzouki, N. M.; Ermler, U.; Baciou, L.: Active site analysis of yeast flavohemoglobin based on its structure with a small ligand or econazole. The FEBS Journal 279 (24), pp. 4565 - 4575 (2012)

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17.

Journal Article

Upadhyay, V.; Demmer, U.; Warkentin, E.; Moll, J.; Shima, S.; Ermler, U.: Structure and Catalytic Mechanism of N⁵,N¹⁰-Methenyltetrahydromethanopterin Cyclohydrolase. Biochemistry 51 (42), pp. 8435 - 8443 (2012)

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18.

Journal Article

Kowalewski, B.; Poppe, J.; Demmer, U.; Warkentin, E.; Dierks, T.; Ermler, U.; Schneider, K.: Nature’s Polyoxometalate Chemistry: X-ray Structure of the Mo Storage Protein Loaded with Discrete Polynuclear Mo−O Clusters. The Journal of Physical Chemistry A 134 (23), pp. 9768 - 9774 (2012)

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19.

Journal Article

Steinbach, A.; Fraas, S.; Harder, J.; Warkentin, E.; Kroneck, P. M. H.; Ermler, U.: Crystal structure of a ring-cleaving cyclohexane-1,2-dione hydrolase, a novel member of the thiamine diphosphate enzyme family. The FEBS Journal 279 (7), pp. 1209 - 1219 (2012)

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20.

Journal Article

Buck, J.; Wacker, A.; Warkentin, E.; Wöhnert, J.; Wirmer-Bartoschek, J.; Schwalbe, H.: Influence of ground-state structure and Mg²⁺ binding on folding kinetics of the guanine-sensing riboswitch aptamer domain. Nucleic Acids Research (London) 39 (22), pp. 9768 - 9778 (2011)

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21.

Journal Article

El Hammi, E.; Warkentin, E.; Demmer, U.; Limam, F.; Marzouki, N. M.; Ermler, U.; Baciou, L.: Structure of Ralstonia eutropha Flavohemoglobin in Complex with Three Antibiotic Azole Compounds. Biochemistry 50 (7), pp. 1255 - 1264 (2011)

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22.

Journal Article

Rekittke, I.; Nonaka, T.; Wiesner, J.; Demmer, U.; Warkentin, E.; Jomaa, H.; Ermler, U.: Structure of the E-1-hydroxy-2-methyl-but-2-enyl-4-diphosphate synthase (GcpE) from Thermus thermophilus. FEBS Letters 585 (3), pp. 447 - 451 (2011)

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23.

Journal Article

Parey, K.; Warkentin, E.; Kroneck, P. M.; Ermler, U.: Reaction Cycle of the Dissimilatory Sulfite Reductase from Archaeoglobus fulgidus. Biochemistry 49 (41), pp. 8912 - 8921 (2010)

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24.

Journal Article

Buschmann, S.; Warkentin, E.; Xie, H.; Langer, J. D.; Ermler, U.; Michel, H.: The Structure of cbb₃ Cytochrome Oxidase Provides Insights into Proton Pumping. Science 329 (5989), pp. 327 - 330 (2010)

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25.

Journal Article

Wischgoll, S.; Demmer, U.; Warkentin, E.; Günther, R.; Boll, M.; Ermler, U.: Structural Basis for Promoting and Preventing Decarboxylation in Glutaryl-Coenzyme A Dehydrogenases. Biochemistry 49 (25), pp. 5350 - 5357 (2010)

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26.

Journal Article

Ceh, K.; Demmer, U.; Warkentin, E.; Moll, J.; Thauer, R. K.; Shima, S.; Ermler, U.: Structural Basis of the Hydride Transfer Mechanism in F₄₂₀-Dependent Methylenetetrahydromethanopterin Dehydrogenase. Biochemistry 49 (42), pp. 10098 - 10105 (2009)

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27.

Journal Article

Hiromoto, T.; Warkentin, E.; Moll, J.; Ermler, U.; Shima, S.: The Crystal Structure of an [Fe]-Hydrogenase-Substrate Complex Reveals the Framework for H₂ Activation. Angewandte Chemie, International Edition in English 48 (35), pp. 6457 - 6460 (2009)

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28.

Journal Article

Hiromoto, T.; Ataka, K.; Pilak, O.; Vogt, S.; Stagni, M. S.; Meyer-Klaucke, W.; Warkentin, E.; Thauer, R. K.; Shima, S.; Ermler, U.: The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex. FEBS Letters 583 (3), pp. 585 - 590 (2009)

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29.

Journal Article

Shima, S.; Pilak, O.; Vogt, S.; Schick, , M.; Stagni, M. S.; Meyer-Klauke, W.; Warkentin, E.; Thauer, R. K.; Ermler, U.: The Crystal Structure of [Fe]-Hydrogenase Reveals the Geometry of the Active Site. Science 321 (5888), pp. 572 - 575 (2008)

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30.

Journal Article

Schiffer, A.; Parey, K.; Warkentin, E.; Diederichs, K.; Huber, H.; Stetter, K. O.; Kroneck, P. M. H.; Ermler, U.: Structure of the Dissimilatory Sulfite Reductase from the Hyperthermophilic Archaeon Archaeoglobus fulgidus. Journal of Molecular Biology (London) 379 (5), pp. 1063 - 1074 (2008)

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31.

Journal Article

Jörg, J.; Unciuleac, M.-C.; Friedrich, T.; Warkentin, E.; Ermler, U.; Boll, M.: Inhibitors of the Molybdenum Cofactor Containing 4-Hydroxybenzoyl-CoA Reductase. Biochemistry 47 (17), pp. 4964 - 4972 (2008)

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32.

Journal Article

Schemberg, J.; Schneider, K.; Demmer, U.; Warkentin, E.; Müller, A.; Ermler, U.: Towards Biological Supramolecular Chemistry: A Variety of Pocket-Templated Metal Oxide Cluster Nucleations in the Cavity of a Mo/W-Storage Protein. Angewandte Chemie, International Edition in English 46 (14), pp. 2408 - 2413 (2007)

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33.

Journal Article

Seedorf, H.; Hagemeier, C. H.; Shima, S.; Thauer, R. K.; Warkentin, E.; Ermler, U.: Structure of coenzyme F₄₂₀H₂ oxidase (FprA), a di-iron flavoprotein from methanogenic Archaea catalysing the reduction of O₂ to H₂O. The FEBS Journal 274 (6), pp. 1588 - 1599 (2007)

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34.

Journal Article

Hagemeier, C. H.; Krüer, M.; Thauer, R.; Warkentin, E.; Ermler, U.: Insight into the mechanism of biological methanol activation based on the crystal structure of the methanol-cobalamin methyltransferase complex. Proceedings of the National Academy of Sciences of the United States of America 103 (50), pp. 18917 - 18922 (2006)

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35.

Journal Article

Pilak, O.; Mamat, B.; Vogt, S.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.; Vonrhein, C.; Warkentin, E.; Ermler, U.: The Crystal Structure of the Apoenzyme of the Iron-Sulphur Cluster-free Hydrogenase. Journal of Molecular Biology (London) 358 (3), pp. 798 - 809 (2006)

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36.

Journal Article

Acharya, P.; Warkentin, E.; Ermler, U.; Thauer, R. K.; Shima, S.: The structure of a Formylmethanofuran: Tetrahydromethanopterin Formyltransferase in Complex with its Coenzymes. Journal of Molecular Biology (London) 357 (3), pp. 870 - 879 (2006)

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37.

Journal Article

Mander, G. J.; Weiss, M. S.; Hedderich, R.; Kahnt, J.; Ermler, U.; Warkentin, E.: X-ray structure of the γ-subunit of a dissimilatory sulfite reductase: Fixed and flexible C-terminal arms. FEBS Letters 579 (21), pp. 4600 - 4604 (2005)

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38.

Journal Article

Aufhammer, S. W.; Warkentin, E.; Ermler, U.; Hagemeier, C. H.; Thauer, R. K.; Shima, S.: Crystal structure of methylenetetrahydromethanopterin (Mer) in complex with coenzyme F₄₂₀: Architecture of the F₄₂₀/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family. Protein Science 14 (7), pp. 1840 - 1849 (2005)

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39.

Journal Article

Scheffel, F.; Warkentin, E.; Hülsmann, A.; Schneider, E.; Ermler, U.: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius. FEBS Letters 579 (13), pp. 2953 - 2958 (2005)

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40.

Journal Article

Warkentin, E.; Hagemeier, C.; Shima, S.; Thauer, R. K.; Ermler, U.: The structure of F₄₂₀-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure. Acta Crystallographica. Section D: Biological Crystallography (Copenhagen), pp. 198 - 202 (2005)

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41.

Journal Article

Unciuleac, M.; Warkentin, E.; Page, C. C.; Boll, M.; Ermler, U.: Structure of Xanthine Oxidase-Related 4-Hydroxybenzoyl-CoA Reductase with an Additional [4Fe-4S] Cluster and an Inverted Electron Flow. Structure 12 (12), pp. 2249 - 2256 (2004)

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42.

Journal Article

Aufhammer, S. W.; Warkentin, E.; Berk, H.; Shima, S.; Thauer, R. K.; Ermler, U.: Coenzyme binding in F₄₂₀-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family. Structure 12 (3), pp. 361 - 370 (2004)

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43.

Journal Article

Unciuleac, M.; Boll, M.; Warkentin, E.; Ermler, U.: Crystallization of 4-hydroxybenzoyl-CoA reductase and the structure of its electron donor ferredoxin. Acta Crystallographica. Section D: Biological Crystallography (Copenhagen) 60, pp. 388 - 391 (2004)

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44.

Journal Article

Weiss, M. S.; Mander, G.; Hedderich, R.; Diederichs, K.; Ermler, U.; Warkentin, E.: Protein structure determination by a combination of long wavelength sulphur phasing and radiation damage induced phasing. Acta Crystallographica Section D-Biological Crystallography D60, pp. 686 - 695 (2004)

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45.

Journal Article

Ermler, U.; Hagemeier, C. H.; Roth, A.; Demmer, U.; Grabarse, W.; Warkentin, E.; Vorhott, J. A.: Structure of methylene-tetrahydromethanopterin dehydrogenase from Methylobacterium extorquens AM1. Structure 10 (8), pp. 1127 - 1137 (2002)

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46.

Journal Article

Shima, S.; Warkentin, E.; Thauer, R. K.; Ermler, U.: Structure and function of enzymes involved in the methanogenic pathway utilizing carbon dioxide and molecular hydrogen [Review]. Journal of Bioenergetics and Biomembranes 93 (6), pp. 519 - 530 (2002)

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47.

Journal Article

Warkentin, E.; Mamat, B.; Sordel-Klippert, M.; Wicke, M.; Thauer, R. K.; Iwata, M.; Iwata, S.; Ermler, U.; Shima, S.: Structures of F₄₂₀H²:NADP⁺ oxidoreductase with and without its substrates bound. The EMBO Journal 20 (23), pp. 6561 - 6569 (2001)

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48.

Journal Article

Shima, S.; Warkentin, E.; Grabarse, W.; Sordel, M.; Wicke, M.; Thauer, R. K.; Ermler, U.: Structure of coenzyme F₄₂₀ dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea. Journal of Molecular Biology (London) 300 (4), pp. 935 - 950 (2000)

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49.

Journal Article

Koepke, J.; Ermler, U.; Warkentin, E.; Wenzl, G.; Flecker, P.: Crystal structure of cancer chemopreventive Bowman-Birk inhibitor in ternary complex with bovine trypsin at 2.3 å resolution. Structural basis of Janus-faced serine protease inhibitor specificity. Journal of Molecular Biology (London) 298 (3), pp. 477 - 491 (2000)

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