Publications of Jürgen Koepke

Thielmann, Y.; Luft, T.; Zint, N.; Koepke, J.: Crystal search - feasibility study of a real-time deep learning process for crystallization well images. Acta Crystallographica Section A: Foundations and Advances A79 (Part 4), pp. 331 - 338 (2023)

Lencina, A. M.; Koepke, J.; Preu, J.; Münke, C.; Gennis, R. B.; Michel, H.; Schurig-Briccio, L. A.: Characterization and X-ray structure of the NADH-dependent coenzyme A disulfide reductase from Thermus thermophilus. Biochimica et Biophysica Acta, Bioenergetics 1860 (11), e148080 (2019)

Zakrzewska, S.; Mehdipour, A. R.; Malviya, V. N.; Nonaka, T.; Koepke, J.; Muenke, C.; Hausner, W.; Hummer, G.; Safarian, S.; Michel, H.: Inward-facing conformation of a multidrug resistance MATE family transporter. Proceedings of the National Academy of Sciences of the United States of America 116 (25), pp. 12275 - 12284 (2019)

Quirnheim Pais, D.; Rathmann, B.; Koepke, J.; Tomova, C.; Wurzinger, P.; Thielmann, Y.: A standardized technique for high-pressure cooling of protein crystals. Acta Crystallographica. Section D: Biological Crystallography (Copenhagen) 73 (12), pp. 997 - 1006 (2017)

Tufar, P.; Rahighi, S.; Kraas, F. I.; Kirchner, D. K.; Löhr, F.; Henrich, E.; Koepke, J.; Dikic, I.; Güntert, P.; Marahiel, M. A. et al.; Dötsch, V.: Crystal Structure of a PCP/Sfp Complex Reveals the Structural Basis for Carrier Protein Posttranslational Modification. Chemistry & Biology 21 (4), pp. 431 - 562 (2014)

Thielmann, Y.; Koepke, J.; Michel, H.: The ESFRI Instruct Core Centre Frankfurt: automated high-throughput crystallization suited for membrane proteins and more. Journal of Structural and Functional Genomics, pp. 63 - 69 (2012)

Hedderich, T.; Marcia, M.; Köpke, J.; Michel, H.: PICKScreens, A New Database for the Comparison of Crystallization Screens for Biological Macromolecules. Crystal Growth & Design 11 (2), pp. 488 - 491 (2011)

Koepke, J.; Olkhova, E.; Angerer, H.; Müller, H.; Peng, G.; Michel, H.: High resolution crystal structure of Paracoccus denitrificans cytochrome c oxidase: New insights into the active site and the proton transfer pathways. Biochimica et Biophysica Acta, Bioenergetics 1787 (6), pp. 635 - 645 (2009)

Dürr, K. L.; Koepke, J.; Hellwig, P.; Müller, H.; Angerer, H.; Peng, G.; Olkhova, E.; Richter, O.-M. H.; Ludwig, B.; Michel, H.: A D-Pathway Mutation Decouples the Paracoccus denitrificans Cytochrome c Oxidase by Altering the Side-Chain Orientation of a Distant Conserved Glutamate. Journal of Molecular Biology (London) 384 (4), pp. 865 - 877 (2008)

Barleben, L.; Panjikar, S.; Ruppert, M.; Koepke, J.; Stöckigt, J.: Molecular Architecture of Strictosidine Glucosidase: The Gateway to the Biosynthesis of the Monoterpenoid Indole Alkaloid Family. The Plant Cell 19 (9), pp. 2886 - 2897 (2007)

Koepke, J.; Krammer, E.-M.; Klingen, A. R.; Sebban, P.; Ullmann, G. M.; Fritzsch, G.: pH Modulates the Quinone Position in the Photosynthetic Reaction Center from Rhodobacter sphaeroides in the Neutral and Charge Separated States. Journal of Membrane Biology 371 (2), pp. 396 - 409 (2007)

Cheap, H.; Tandori, J.; Derrien, V.; Benoit, M.; de Oliveira, P.; Koepke, J.; Lavergne, J.; Maroti, P.; Sebban, P.: Evidence for Delocalized Anticooperative Flash Induced Proton Binding as Revealed by Mutants at the M266His Iron Ligand in Bacterial Reaction Centers. Biochemistry 46 (15), pp. 4510 - 4521 (2007)

Ma, X.; Panjikar, S.; Koepke, J.; Loris, E.; Stöckigt, J.: The Structure of Rauvolfia serpentina Strictosidine Synthase Is a Novel Six-Bladed β-Propeller Fold in Plant Proteins. The Plant Cell 18 (4), pp. 907 - 920 (2006)

Katsemi, V.; Lücke, C.; Koepke, J.; Löhr, F.; Maurer, S.; Fritzsch, G.; Rüterjans, H.: Mutational and Structural Studies of the Diisopropylfluorophosphatase from Loligo vulgaris Shed New Light on the Catalytic Mechanism of the Enzyme. Biochemistry 44 (25), pp. 9022 - 9033 (2005)

Ma, X.; Koepke, J.; Panjikar, S.; Fritzsch, G.; Stöckigt, J.: Crystal Structure of Vinorine Synthase, the First Representative of the BAHD Superfamily. The Journal of Biological Chemistry 280 (14), pp. 13576 - 13583 (2005)

Barleben, L.; Ma, X.; Koepke, J.; Peng, G.; Michel, H.; Stöckigt, J.: Expression, purification, crystallization and preliminary X-ray analysis of strictosidine glucosidase, an enzyme initiating biosynthetic pathways to a unique diversity of indole alkaloid skeletons. Proteins & Proteomics, pp. 89 - 92 (2005)

Ma, X.; Koepke, J.; Fritzsch, G.; Diem, R.; Kutchan, T. M.; Michel, H.; Stöckigt, J.: Crystallization and preliminary X-ray crystallographic analysis of strictosidine synthase from Rauvolfia: the first member of a novel enzyme family. Biochimica et Biophysica Acta-Proteins and Proteomics 1702, pp. 121 - 124 (2004)

Ma, X.; Koepke, J.; Bayer, A.; Linhard, V.; Fritzsch, G.; Zhang, B.; Michel, H.; Stöckigt, J.: Vinorine synthase from Rauvolfia: the first example of crystallization and preliminary X-ray diffraction analysis of an enzyme of the BAHD superfamily. Biochimica et Biophysica Acta-Proteins and Proteomics 1701 (1-2), pp. 129 - 132 (2004)

Koepke, J.; Scharff, E. I.; Luecke, C.; Rueterjans, H.; Fritzsch, G.: Statistical analysis of crystallographic data obtained from squid ganglion DFPase at 0.85 Å resolution. Acta Crystallographica. Section D: Biological Crystallography (Copenhagen) D59 (10), pp. 1744 - 1754 (2003)

Scharff, E. I.; Koepke, J.; Fritzsch, G.; Lücke, C.; Rüterjahns, H.: Crystal structure of diisopropylfluorophosphatase from Loligo vulgaris. Structure 9 (6), pp. 493 - 502 (2001)

Scharff, E. I.; Lücke, C.; Fritzsch, G.; Koepke, J.; Hartleib, J.; Dierl, S.; Rüterjans, H.: Crystallization and preliminary X-ray crystallographic analysis of DFPase from Loligo vulgaris. Acta Crystallographica Section D-Biological Crystallography 57 (1), pp. 148 - 149 (2001)

Hunte, C.; Koepke, J.; Lange, C.; Roßmanith, T.; Michel, H.: Structure at 2.3 Å resolution of the cytochrome bc₁ complex from the yeast Saccharomyces cerevisiae co-crystallized with an antibody Fv fragment. Structure 8 (6), pp. 669 - 684 (2000)

Koepke, J.; Ermler, U.; Warkentin, E.; Wenzl, G.; Flecker, P.: Crystal structure of cancer chemopreventive Bowman-Birk inhibitor in ternary complex with bovine trypsin at 2.3 å resolution. Structural basis of Janus-faced serine protease inhibitor specificity. Journal of Molecular Biology (London) 298 (3), pp. 477 - 491 (2000)

Chen, I.-P.; Mathis, P.; Koepke, J.; Michel, H.: Uphill Electron Transfer in the Tetraheme Cytochrome Subunit of the Rhodopseudomonas viridis Photosynthetic Reaction Center:  Evidence from Site-Directed Mutagenesis. Biochemistry 39 (13), pp. 3592 - 3602 (2000)

Koepke, J.; Hu, X.; Münke, C.; Schulten, K.; Michel, H.: The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum. Structure 4 (5), pp. 581 - 597 (1996)

Schmidt, T. G.M.; Koepke, J.; Frank, R.; Skerra, A.: Molecular interaction between the Strep-tag affinity peptide and its cognate target streptavidin. Journal of Molecular Biology (London) 255 (5), pp. 753 - 766 (1996)

Hu, X.; Xu, D.; Hamer, K.; Schulten, K.; Koepke, J.; Michel, H.: Predicting the structure of the light-harvesting complex II of Rhodospirillum molischianum. Protein Science 4 (9), pp. 1670 - 1682 (1995)

Michel, H.; Sinning, I.; Koepke, J.; Ewald, G.; Fritzsch, G.: The photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis — An overview and recent advances. Biochimica et Biophysica Acta, Bioenergetics 1018 (1-2), pp. 115 - 118 (1990)

Sinning, I. M.; Koepke, J.; Schiller, B.; Michel, H.: First glance on the three-dimensional structure of the photosynthetic reaction center from a herbicide-resistant Rhodopseudomonas viridis mutant. Zeitschrift für Naturforschung, C: Journal of Biosciences 45 (5), pp. 455 - 458 (1990)

Hu, X.; Xu , D.; Hamer, K.; Schulten, K.; Koepke, J.; Michel, H.: Prediction of the Structure of an Integral Membrane Protein: The Light-Harvesting Complex II of Rhodospirillum molischianum. In: Biological Membranes, pp. 503 - 533 (Ed. Merz, Jr., K. M.). Birkhäuser, Boston, USA (1996)

Hu, X.; Xu, D.; Hamer, K.; Schulten, K.; Koepke, J.; Michel, H.: Knowledge Based Structure Prediction of the Light-Harvesting Complex II of Rhodospirillum molischianum. In: DIMACS Series in Discrete Mathematics and Theoretical Computer Science, Vol. 23, pp. 97 - 122 (Eds. Pardalos, P. M.; Shalloway, D.). American Mathematical Society, Providence, R.I., (1996)

Koepke, J.; Scharff, E. I.; Lücke , C.; Rüterjans, H.; Fritzsch, G.: Atomic resolution crystal structure of squid ganglion DFPase. Proceedings of the 9th International Conference on the Crystallization of Biological Macromolecules, Jena, Germany, May 23, 2002 - May 28, 2002. Acta Crystallographica Section D-Biological Crystallography D58 (Part 10 Special Issue 1), pp. 1757 - 1759 (2002)

Fritzsch, G.; Koepke, J.; Diem, R.; Kuglstatter, A.; Baciou, L.: Charge separation induces conformational changes in the photosynthetic reaction centre of purple bacteria. Proceedings of the 9th International Conference on the Crystallization of Biological Macromolecules, Jena, Germany, March 23, 2002 - March 28, 2002. Acta Crystallographica Section D-Biological Crystallography D58 (Part 10 Special Issue 1), pp. 1660 - 1663 (2002)

Sinning, I. M.; Koepke, J.; Michel, H.: Recent Advances in the Structure Analysis of Rhodopseudomonas viridis Reaction Center Mutants. Reaction Centers of Photosynthetic Bacteria, Feldafing-II-Meeting. Springer Series in Biophysics 6, pp. 199 - 208 (1990)

Sinning, I. M.; Koepke, J.; Schiller, B.; Mathies, P.; Rutherford, A.W.; Michel, H.: The Herbicide Resistant Mutant T1 from Rhodopseudomonasviridis Altered Herbicide Binding and Three-Dimensional Structure. Proceedings of the VIIIth International Conference on Photosynthesis, Stockholm, Sweden, August 06, 1989 - August 11, 1989. Current Research in Photosynthesis 1, pp. 173 - 176 (1990)