Publications of the Max Planck Institute of Biophysics 1947 – present

Max Planck Institute of Biophysics

Journal Article (3131)

2023

Journal Article

Hanson, S. M.; Scholüke, J.; Liewald, J.; Sharma, R.; Ruse, C.; Engel, M.; Schüler, C.; Klaus, A.; Arghittu, S.; Baumbach, F. et al.; Seidenthal, M.; Dill, H.; Hummer, G.; Gottschalk, A.: Structure-function analysis suggests that the photoreceptor LITE-1 is a light-activated ion channel. Current biology: CB 33 (16), pp. 3423 - 3435.e5 (2023)

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Jang, S.; Narayanasamy, K. K.; Rahm, J. V.; Saguy, A.; Kompa, J.; Dietz, M. S.; Johnsson, K.; Shechtman, Y.; Heilemann, M.: Neural network-assisted single-molecule localization microscopy with a weak-affinity protein tag. Biophysical Reports 3 (3), 100123 (2023)

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Meier-Credo, J.; Heiniger, B.; Schori, C.; Rupprecht, F.; Michel, H.; Ahrens, C. A.; Langer, J. D.: Detection of Known and Novel Small Proteins in Pseudomonas stutzeri Using a Combination of Bottom-Up and Digest-Free Proteomics and Proteogenomics. Analytical Chemistry 95, pp. 11892 - 11900 (2023)

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Ornelas, P.; Bausewein, T.; Martin, J.; Morgner, N.; Nussberger, S.; Kühlbrandt, W.: Two conformations of the Tom20 preprotein receptor in the TOM holo complex. Proceedings of the National Academy of Sciences of the United States of America 120 (34), e2301447120 (2023)

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Brenner, J.; Klumpe, S.; Wilfling, F.; Plitzko, J. M.: Towards Temporal Resolution in Correlative Cryo-electron Tomography. Microscopy and Microanalysis 29 (Supplement\_1), pp. 1937 - 1938 (2023)

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Castillo Duque de Estrada, N. M.; Thoms, M.; Flemming, D.; Hammaren, H. M.; Buschauer, R.; Ameismeier, M.; Baßler, J.; Beck, M.; Beckmann, R.; Hurt, E.: Structure of nascent 5S RNPs at the crossroad between ribosome assembly and MDM2-p53 pathways. Nature Structural and Molecular Biology 30, pp. 1119 - 1131 (2023)

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Gorriti, M. F.; Bamann, C.; Alonso-Reyes, D. G.; Wood, P. G.; Bamberg, E.; Farías, M. E.; Gärtner, W.; Albarracín, V. H.: Functional characterization of xanthorhodopsin in Salinivibrio socompensis, a novel halophile isolated from modern stromatolites. Photochemical & Photobiological Sciences 22 (8), pp. 1809 - 1823 (2023)

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Wu, D.; Mehdipour, A. R.; Finke, F.; Goojani, H. G.; Groh, R. R.; Grund, T. N.; Reichhart, T. M. B.; Zimmermann, R.; Welsch, S.; Bald, D. et al.; Shepherd, M.; Hummer, G.; Safarian, S.: Dissecting the conformational complexity and mechanism of a bacterial heme transporter. Nature Chemical Biology 19 (8), pp. 992 - 1003 (2023)

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Saguy, A.; Alalouf, O.; Opatovski, N.; Jang, S.; Heilemann, M.; Shechtman, Y.: DBlink: dynamic localization microscopy in super spatiotemporal resolution via deep learning. Nature Methods 20 (12), pp. 1939 - 1948 (2023)

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Chang, S.-Y. S.; Dijkman, P. M.; Wiessing, S. A.; Kudryashev, M.: Determining the structure of the bacterial voltage-gated sodium channel NaChBac embedded in liposomes by cryo electron tomography and subtomogram averaging. Scientific Reports 13, 11523 (2023)

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Goretzki, B.; Wiedemann, C.; McCray, B. A.; Schäfer, S. L.; Jansen, J.; Tebbe, F.; Mitrovic, S.-A.; Nöth, J.; Cabezudo, A. C.; Donohue, J. K. et al.; Jeffries, C. M.; Steinchen, W.; Stengel, F.; Sumner, C. J.; Hummer, G.; Hellmich, U. A.: Crosstalk between regulatory elements in disordered TRPV4 N-terminus modulates lipid-dependent channel activity. Nature Communications 14, 4165 (2023)

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Ibrahim, M.; Gilbert, J.; Heinz, M.; Nylander, T.; Schwierz, N.: Structural insights on ionizable Dlin-MC3-DMA lipids in DOPC layers by combining accurate atomistic force fields, molecular dynamics simulations and neutron reflectivity. Nanoscale 15 (27), pp. 11647 - 11656 (2023)

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Reislöhner, S.; Schermann, G.; Kilian, M.; Santamaría-Muñoz, D.; Zimmerli, C.; Kellner, N.; Baßler, J.; Brunner, M.; Hurt, E.: Identification and characterization of sugar-regulated promoters in Chaetomium thermophilum. BMC Biotechnology 23, 19 (2023)

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Xing, H.; Taniguchi, R.; Khusainov, I.; Kreysing, J. P.; Welsch, S.; Turoňová, B.; Beck, M.: Translation dynamics in human cells visualized at high resolution reveal cancer drug action. Science 381 (6653), pp. 70 - 75 (2023)

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Kovalev, K.; Tsybrov, F.; Alekseev, A.; Shevchenko, V.; Soloviov, D.; Siletsky, S.; Bourenkov, G.; Agthe, M.; Nikolova, M.; von Stetten, D. et al.; Astashkin, R.; Bukhdruker, S.; Chizhov, I.; Royant, A.; Kuzmin, A.; Gushchin, I.; Rosselli, R.; Rodriguez-Valera, F.; Ilyinskiy, N.; Rogachev, A.; Borshchevskiy, V.; Schneider, T. R.; Bamberg, E.; Gordeliy, V.: Mechanisms of inward transmembrane proton translocation. Nature Structural and Molecular Biology 30 (7), pp. 970 - 979 (2023)

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Schmitt, D.; Bozkurt, S.; Henning-Domres, P.; Huesmann, H.; Eimer, S.; Bindila, L.; Behrends, C.; Boyle, E.; Wilfling, F.; Tascher, G. et al.; Münch, C.; Behl, C.; Kern, A.: FACS-mediated isolation of native autophagic vesicles. Autophagy 19 (7), pp. 2146 - 2147 (2023)

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Thielmann, Y.; Luft, T.; Zint, N.; Koepke, J.: Crystal search - feasibility study of a real-time deep learning process for crystallization well images. Acta Crystallographica Section A: Foundations and Advances A79 (Part 4), pp. 331 - 338 (2023)

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Asgari, N.; Baaske, M. D.; Orrit, M.: Burst-by-Burst Measurement of Rotational Diffusion at Nanosecond Resolution Reveals Hot-Brownian Motion and Single-Chain Binding. ACS Nano 17 (13), pp. 12684 - 12692 (2023)

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Fuss, M. F.; Wieferig, J.-P.; Corey, R. A.; Hellmich, Y.; Tascón, I.; Sousa, J. S.; Stansfeld, P. J.; Vonck, J.; Hänelt, I.: Cyclic di-AMP traps proton-coupled K⁺ transporters of the KUP family in an inward-occluded conformation. Nature Communications 14, 3683 (2023)

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Drakonaki, A.; Mathioudaki, E.; Geladas, E. D.; Konsolaki, E.; Vitsaxakis, N.; Chaniotakis, N.; Xie, H.; Tsiotis, G.: Production of Polyhydroxybutyrate by Genetically Modified Pseudomonas sp. phDV1: A Comparative Study of Utilizing Wine Industry Waste as a Carbon Source. Microorganisms 11 (16), 1592 (2023)

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Bullerjahn, J. T.; von Bülow, S.; Heidari, M.; Hénin, J.; Hummer, G.: Unwrapping NPT Simulations to Calculate Diffusion Coefficients. Journal of Chemical Theory and Computation 19, pp. 3406 - 3417 (2023)

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Seidel, M.; Romanov, N.; Obarska-Kosinska, A.; Becker, A.; Trevisan Doimo de Azevedo, N.; Provaznik, J.; Nagaraja, S. R.; Landry, J. J. M.; Benes, V.; Beck, M.: Co-translational binding of importins to nascent proteins. Nature Communications 14, 3418 (2023)

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Foronda, H.; Fu, Y.; Covarrubias-Pinto, A.; Bocker, H. T.; González, A.; Seemann, E.; Franzka, P.; Bock, A.; Bhaskara, R. M.; Liebmann, L. et al.; Hoffmann, M. E.; Katona, I.; Koch, N.; Weis, J.; Kurth, I.; Gleeson, J. G.; Reggiori, F.; Hummer, G.; Kessels, M. M.; Qualmann, B.; Mari, M.; Dikić, I.; Hübner, C. A.: Heteromeric clusters of ubiquitinated ER-shaping proteins drive ER-phagy. Nature 618 (7964), pp. 402 - 410 (2023)

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González, A.; Covarrubias-Pinto, A.; Bhaskara, R. M.; Glogger, M.; Kuncha, S. K.; Xavier, A.; Seemann, E.; Misra, M.; Hoffmann, M. E.; Bräuning, B. et al.; Balakrishnan, A.; Qualmann, B.; Dötsch, V.; Schulman, B. A.; Kessels, M. M.; Hübner, C. A.; Heilemann, M.; Hummer, G.; Dikić, I.: Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum. Nature 618 (7964), pp. 394 - 401 (2023)

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Kim, E.; Barth, R.; Dekker, C.: Looping the Genome with SMC Complexes. Annual Review of Biochemistry 92, pp. 15 - 41 (2023)

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Winiarska, A.; Ramírez-Amador, F.; Hege, D.; Gemmecker, Y.; Prinz, S.; Hochberg, G.; Heider, J.; Szaleniec, M.; Schuller, J. M.: A bacterial tungsten-containing aldehyde oxidoreductase forms an enzymatic decorated protein nanowire. Science Advances 9, eadg6689 (2023)

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Valko, A.; Fracchiolla, D.: “Autophagic landscapes: on the paradox of survival through self-degradation” – A science-inspired exhibition. Autophagy 19 (9), pp. 2601 - 2606 (2023)

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Cai, W.; Jäger, M.; Bullerjahn, J. T.; Hugel, T.; Wolf, S.; Balzer, B. N.: Anisotropic Friction in a Ligand-Protein Complex. Nano Letters 23 (10), pp. 4111 - 4119 (2023)

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Last, M. G. F.; Tuijtel, M.; Voortman, L. M.; Sharp, T. H.: Selecting optimal support grids for super-resolution cryogenic correlated light and electron microscopy. Scientific Reports 13, 8270 (2023)

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Lettl, C.; Schindele, F.; Mehdipour, A. R.; Steiner, T.; Ring, D.; Brack-Werner, R.; Stecher, B.; Eisenreich, W.; Bilitewski, U.; Hummer, G. et al.; Witschel, M.; Fischer, W.; Haas, R.: Selective killing of the human gastric pathogen Helicobacter pylori by mitochondrial respiratory complex I inhibitors. Cell Chemical Biology 30 (5), pp. 499 - 512 (2023)

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Capitanio, C.; Bieber, A.; Wilfling, F.: How Membrane Contact Sites Shape the Phagophore. Contact 6 (2023)

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Ehr, J. v.; Korn, S. M.; Weiß, L.; Schlundt, A.: ¹H, ¹³C, ¹⁵N backbone chemical shift assignments of the extended ARID domain in human AT-rich interactive domain protein 5a (Arid5a). Biomolecular NMR Assignments 17 (1), pp. 121 - 127 (2023)

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Okhrimenko, I. S.; Kovalev, K.; Petrovskaya, L. E.; Ilyinsky, N. S.; Alekseev, A. A.; Marin, E.; Rokitskaya, T. I.; Antonenko, Y. N.; Siletsky, S. A.; Popov, P. A. et al.; Zagryadskaya, Y. A.; Soloviov, D. V.; Chizhov, I. V.; Zabelskii, D. V.; Ryzhykau, Y. L.; Vlasov, A. V.; Kuklin, A. I.; Bogorodskiy, A. O.; Mikhailov, A. E.; Sidorov, D. V.; Bukhalovich, S.; Tsybrov, F.; Bukhdruker, S.; Vlasova, A. D.; Borshchevskiy, V. I.; Dolgikh, D. A.; Kirpichnikov, M. P.; Bamberg, E.; Gordeliy, V. I.: Mirror proteorhodopsins. Communications Chemistry 6, 88 (2023)

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Bhattacharya, A.; Mukherjee, R.; Kuncha, S. K.; Brunstein, M. E.; Rathore, R.; Junek, S.; Münch, C.; Đikić, I.: A lysosome membrane regeneration pathway depends on TBC1D15 and autophagic lysosomal reformation proteins. Nature Cell Biology 25 (5), pp. 685 - 698 (2023)

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Lyratzakis, A.; Meier-Credo, J.; Langer, J. D.; Tsiotis, G.: Insights into the sulfur metabolism of Chlorobaculum tepidum by label-free quantitative proteomics. Proteomics 23 (10), 2200138 (2023)

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Sun, C.; Desch, K.; Nassim-Assir, B.; Giandomenico, S. L.; Nemcova, P.; Langer, J. D.; Schuman, E. M.: An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Science 380 (6647), eadf2018 (2023)

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Yu, M.; Heidari, M.; Mikhaleva, S.; Tan, P. S.; Mingu, S.; Ruan, H.; Reinkemeier, C. D.; Obarska-Kosinska, A.; Siggel, M.; Beck, M. et al.; Hummer, G.; Lemke, E. A.: Visualizing the disordered nuclear transport machinery in situ. Nature 617 (7959), pp. 162 - 169 (2023)

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Jung, H.; Covino, R.; Arjun, A.; Leitold, C.; Dellago, C.; Bolhuis, P. G.; Hummer, G.: Machine-guided path sampling to discover mechanisms of molecular self-organization. Nature Computational Science 3 (4), pp. 334 - 345 (2023)

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Kalavacherla, T.; Buschmann, S.; Schleker, E. S. M.; Michel, H.; Reinhart, C.: Purification and characterization of eukaryotic ATP-dependent transporters homologously expressed in Pichia pastoris for structural studies by cryo-electron microscopy. Protein Expression and Purification 204, 106230 (2023)

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Lambertz, J.; Meier-Credo, J.; Kucher, S.; Bordignon, E.; Langer, J. D.; Nowaczyk, M. M.: Isolation of a novel heterodimeric PSII complex via strep-tagged PsbO. Biochimica et Biophysica Acta, Bioenergetics 1864 (2), 148953 (2023)

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Pradhan, B.; Kanno, T.; Umeda Igarashi, M.; Loke, M. S.; Baaske, M. D.; Wong, J. S. K.; Jeppsson, K.; Björkegren, C.; Kim, E.: The Smc5/6 complex is a DNA loop-extruding motor. Nature 616 (7958), pp. 843 - 848 (2023)

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Fábián, B.; Thallmair, S.; Hummer, G.: Optimal Bond Constraint Topology for Molecular Dynamics Simulations of Cholesterol. Journal of Chemical Theory and Computation 19 (5), pp. 1592 - 1601 (2023)

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Li, M.; Tripathi-Giesgen, I.; Schulman, B. A.; Baumeister, W.; Wilfling, F.: In situ snapshots along a mammalian selective autophagy pathway. Proceedings of the National Academy of Sciences of the United States of America 120 (12), e2221712120 (2023)

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Hegemann, P.; Michel, H.: Dieter Oesterhelt (1940-2022): Life with light and color, pioneer of membrane protein research. Biophysics and Physicobiology 20 (Supplemental), e201010 (2023)

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Sprankel, L.; Vizaragga, D.; Martín, J.; Manger, S.; Meier-Credo, J.; Marcos, M.; Julve, J.; Rotllan, N.; Scheffer, M. P.; Escolà-Gil, J. C. et al.; Langer, J. D.; Piñol, J.; Fita, I.; Frangakis, A. S.: Essential protein P116 extracts cholesterol and other indispensable lipids for Mycoplasmas. Nature Structural and Molecular Biology 30 (3), pp. 321 - 329 (2023)

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Korn, S. M.; Ehr, J. v.; Dhamotharan, K.; Tants, J.-N.; Abele, R.; Schlundt, A.: Insight into the Structural Basis for Dual Nucleic Acid-Recognition by the Scaffold Attachment Factor B2 Protein. International Journal of Molecular Sciences 24 (4), 3286 (2023)

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Pietrek, L. M.; Stelzl, L. S.; Hummer, G.: Structural ensembles of disordered proteins from hierarchical chain growth and simulation. Current Opinion in Structural Biology 78, 102501 (2023)

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Hegemann, P.; Michel, H.: Dieter Oesterhelt (1940–2022). Science 379 (6630), p. 337 (2023)

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von Bülow, S.; Sikora, M.; Blanc, F. E. C.; Covino, R.; Hummer, G.: Antibody accessibility determines location of spike surface mutations in SARS-CoV-2 variants. PLoS Computational Biology 19 (1), e1010822 (2023)

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Xie, H.; Lyratzakis, A.; Khera, R.; Koutantou, M.; Welsch, S.; Michel, H.; Tsiotis, G.: Cryo-EM structure of the whole photosynthetic reaction center apparatus from the green sulfur bacterium Chlorobaculum tepidum. Proceedings of the National Academy of Sciences of the United States of America 120 (5), e2216734120 (2023)

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Honti, B.; Fábián, B.; Idrissi, A.; Jedlovszky, P.: Surface Properties of N,N-Dimethylformamide-Water Mixtures, As Seen from Computer Simulations. The Journal of Physical Chemistry B 127 (4), pp. 1050 - 1062 (2023)

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Hampoelz, B.; Baumbach, J.: Nuclear envelope assembly and dynamics during development. Seminars in Cell & Developmental Biology 133, pp. 96 - 106 (2023)

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Grund, T. N.; Kabashima, Y.; Kusumoto, T.; Wu, D.; Welsch, S.; Sakamoto, J.; Michel, H.; Safarian, S.: The cryoEM structure of cytochrome bd from C. glutamicum provides novel insights into structural properties of actinobacterial terminal oxidases. Frontiers in Chemistry (2023)

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Klusch, N.; Dreimann, M.; Senkler, J.; Rugen, N.; Kühlbrandt, W.; Braun, H.-P.: Cryo-EM structure of the respiratory I + III₂ supercomplex from Arabidopsis thaliana at 2 Å resolution. Nature Plants 9, pp. 142 - 156 (2023)

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Wieferig, J.-P.; Kühlbrandt, W.: Analysis of the conformational heterogeneity of the Rieske iron–sulfur protein in complex III₂ by cryo-EM. IUCrJ 10 (1), pp. 27 - 37 (2023)

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2022

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Zhu, R.; Canena, D.; Sikora, M.; Klausberger, M.; Seferovic, H.; Mehdipour, A. R.; Hain, L.; Laurent, E.; Monteil, V.; Wirnsberger, G. et al.; Wieneke, R.; Tampé, R.; Kienzl, N. F.; Mach, L.; Mirazimi, A.; Oh, Y. J.; Penninger, J. M.; Hummer, G.; Hinterdorfer, P.: Force-tuned avidity of spike variant-ACE2 interactions viewed on the single-molecule level. Nature Communications 13 (1), 7926 (2022)

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Jensen, L. E.; Rao, S.; Schuschnig, M.; Cada, A. K.; Martens, S.; Hummer, G.; Hurley, J. H.: Membrane curvature sensing and stabilization by the autophagic LC3 lipidation machinery. Science Advances 8 (50), eadd1436 (2022)

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Hammarén, H. M.; Geissen, E.-M.; Potel, C. M.; Beck, M.; Savitski, M. M.: Protein-Peptide Turnover Profiling reveals the order of PTM addition and removal during protein maturation. Nature Communications 13, 7431 (2022)

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Hoffmann, P. C.; Kreysing, J. P.; Khusainov, I.; Tuijtel, M.; Welsch, S.; Beck, M.: Structures of the eukaryotic ribosome and its translational states in situ. Nature Communications 13, 7435 (2022)

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Krause, D. S.; Dikic, I.: Mycobacterium tuberculosis hijacks ubiquitin to inhibit pyroptosis. Molecular Cell 82 (24), pp. 4588 - 4590 (2022)

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Linke, M.; Quoika, P. K.; Bramas, B.; Köfinger, J.; Hummer, G.: Complexes++: Efficient and versatile coarse-grained simulations of protein complexes and their dense solutions. The Journal of Chemical Physics 157 (20), 204802 (2022)

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Laube, E.; Meier-Credo, J.; Langer, J. D.; Kühlbrandt, W.: Conformational changes in mitochondrial complex I of the thermophilic eukaryote Chaetomium thermophilum. Science Advances 8 (47), eadc9952 (2022)

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Schiller, J.; Laube, E.; Wittig, I.; Kühlbrandt, W.; Vonck, J.; Zickermann, V.: Insights into complex I assembly: Function of NDUFAF1 and a link with cardiolipin remodeling. Science Advances 8 (46), eadd3855 (2022)

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Oo, J. A.; Pálfi, K.; Warwick, T.; Wittig, I.; Prieto-Garcia, C.; Matkovic, V.; Tomašković, I.; Boos, F.; Izquierdo Ponce, J.; Teichmann, T. et al.; Petriukov, K.; Haydar, S.; Maegdefessel, L.; Wu, Z.; Pham, M. D.; Krishnan, J.; Baker, A. H.; Günther, S.; Ulrich, H. D.; Đikić, I.; Leisegang, M. S.; Brandes, R. P.: Long non-coding RNA PCAT19 safeguards DNA in quiescent endothelial cells by preventing uncontrolled phosphorylation of RPA2. Cell Reports: Methods 41 (7), 111670 (2022)

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Schaefer, S. L.; Hummer, G.: Sublytic gasdermin-D pores captured in atomistic molecular simulations. eLife 11, e81432 (2022)

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Kühlbrandt, W.: Concluding remarks: Challenges and future developments in biological electron cryo-microscopy. Faraday Discussions 240, pp. 323 - 335 (2022)

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Siggel, M.; Kehl, S.; Reuter, K.; Köfinger, J.; Hummer, G.: TriMem: A parallelized hybrid Monte Carlo software for efficient simulations of lipid membranes. The Journal of Chemical Physics 157 (17), 174801 (2022)

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Astashkin, R.; Kovalev, K.; Bukhdruker, S.; Vaganova, S.; Kuzmin, A.; Alekseev, A.; Balandin, T.; Zabelskii, D.; Gushchin, I.; Royant, A. et al.; Volkov, D.; Bourenkov, G.; Koonin, E.; Engelhard, M.; Bamberg, E.; Gordeliy, V.: Structural insights into light-driven anion pumping in cyanobacteria. Nature Communications 13, 6460 (2022)

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Vitt, S.; Prinz, S.; Eisinger, M. L.; Ermler, U.; Buckel, W.: Purification and structural characterization of the Na⁺-translocating ferredoxin: NAD⁺ reductase (Rnf) complex of Clostridium tetanomorphum. Nature Communications 13, 6315 (2022)

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Shah, V. J.; Đikić, I.: Localization matters in targeted protein degradation. Cell Chemical Biology 29 (10), pp. 1465 - 1466 (2022)

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Cruz-León, S.; Schwierz, N.: RNA Captures More Cations than DNA: Insights from Molecular Dynamics Simulations. The Journal of Physical Chemistry B (2022)

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Schleker, E. S. M.; Buschmann, S.; Xie, H.; Welsch, S.; Michel, H.; Reinhart, C.: Structural and functional investigation of ABC transporter STE6-2p from Pichia pastoris reveals unexpected interaction with sterol molecules. Proceedings of the National Academy of Sciences of the United States of America 126 (43), pp. 8646 - 8654 (2022)

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Mathioudaki, E.; Alifragis, Y.; Fouskaki, M.; Chochlakis, D.; Xie, H.; Psaroulaki, A.; Tsiotis, G.; Chaniotakis, N.: Electrochemical Antigenic Sensor for the Diagnosis of Chronic Q Fever. Current Research in Biotechnology 4, pp. 537 - 543 (2022)

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Lee, Y.; Haapanen, O.; Altmeyer, A.; Kühlbrandt, W.; Sharma, V.; Zickermann, V.: Ion transfer mechanisms in Mrp-type antiporters from high resolution cryoEM and molecular dynamics simulations. Nature Communications 13 (1), 6091 (2022)

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Schmitt, D.; Bozkurt, S.; Henning-Domres, P.; Huesmann, H.; Eimer, S.; Bindila, L.; Behrends, C.; Boyle, E.; Wilfling, F.; Tascher, G. et al.; Münch, C.; Behl, C.; Kern, A.: Lipid and protein content profiling of isolated native autophagic vesicles. EMBO Reports, e53065 (2022)

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Schulz, L.; Guo, Z.; Zarzycki, J.; Steinchen, W.; Schuller, J. M.; Heimerl, T.; Prinz, S.; Mueller-Cajar, O.; Erb, T. J.; Hochberg, G. K. A.: Evolution of increased complexity and specificity at the dawn of form I Rubiscos. Science 378 (6616), pp. 155 - 160 (2022)

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Bieber, A.; Capitanio, C.; Erdmann, P. S.; Fiedler, F.; Beck, F.; Lee, C.-W.; Li, D.; Hummer, G.; Schulman, B. A.; Baumeister, W. et al.; Wilfling, F.: In situ structural analysis reveals membrane shape transitions during autophagosome formation. Proceedings of the National Academy of Sciences of the United States of America 119 (39), e2209823119 (2022)

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Zöller, J.; Hong, S.; Eisinger, M. L.; Anderson, M.; Radloff, M.; Desch, K.; Gennis, R.; Langer, J. D.: Ligand binding and conformational dynamics of the E. coli nicotinamide nucleotide transhydrogenase revealed by hydrogen/deuterium exchange mass spectrometry. Computational and Structural Biotechnology Journal 20, pp. 5430 - 5439 (2022)

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Khera, R.; Mehdipour, A. R.; Bolla, J. R.; Kahnt, J.; Welsch, S.; Ermler, U.; Münke, C.; Robinson, C. V.; Hummer, G.; Xie, H. et al.; Michel, H.: Cryo-EM structures of pentameric autoinducer-2 exporter from Escherichia coli reveal its transport mechanism. The EMBO Journal 41 (18), e109990 (2022)

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Steinhilper, R.; Höff, G.; Heider, J.; Murphy, B. J.: Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli. Nature Communications 13, 5395 (2022)

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Mukherjee, R.; Dikic, I.: Regulation of Host-Pathogen Interactions via the Ubiquitin System. Annual Review of Microbiology 76, pp. 211 - 233 (2022)

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Kafkia, E.; Andres-Pons, A.; Ganter, K.; Seiler, M.; Smith, T. S.; Andrejeva, A.; Jouhten, P.; Pereira, F.; Franco, C.; Kuroshchenkova, A. et al.; Leone, S.; Sawarkar, R.; Boston, R.; Thaventhiran, J.; Zaugg, J. B.; Lilley, K. S.; Lancrin, C.; Beck, M.; Patil, K. R.: Operation of a TCA cycle subnetwork in the mammalian nucleus. Science Advances 8 (35), eabq5206 (2022)

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Mikolajczyk, K.; Sikora, M.; Hanus, C.; Kaczmarek, R.; Czerwinski, M.: One of the two N-glycans on the human Gb3/CD77 synthase is essential for its activity and allosterically regulates its function. Biochemical and Biophysical Research Communications (Orlando, FL) 617, pp. 36 - 41 (2022)

MPG.PuRe

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Palacio-Rodriguez, K.; Vroylandt, H.; Stelzl, L. S.; Pietrucci, F.; Hummer, G.; Cossio, P.: Transition Rates and Efficiency of Collective Variables from Time-Dependent Biased Simulations. The Journal of Physical Chemistry Letters 13 (32), pp. 7490 - 7496 (2022)

MPG.PuRe

Journal Article

Sušac, L.; Vuong, M. T.; Thomas, C.; von Bülow, S.; O'Brien-Ball, C.; Santos, A. M.; Fernandes, R. A.; Hummer, G.; Tampé, R.; Davis, S. J.: Structure of a fully assembled tumor-specific T cell receptor ligated by pMHC. Cell 185 (17), pp. 3201 - 3213 (2022)

MPG.PuRe

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Journal Article

Bullerjahn, J. T.; Hummer, G.: Reversible bond kinetics from single-molecule force spectroscopy experiments close to equilibrium. Physical Review Research 4 (3), 033097 (2022)

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Journal Article

Sinning, I.; McDowell, M. A.: Cryo-EM insights into tail-anchored membrane protein biogenesis in eukaryotes. Current Opinion in Structural Biology 75, 102428 (2022)

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Journal Article

Fábián, B.; Thallmair, S.; Hummer, G.: Small ionic radii limit time step in Martini 3 molecular dynamics simulations. The Journal of Chemical Physics 157 (3), 034101 (2022)

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Journal Article

Meier-Credo, J.; Preiss, L.; Wüllenweber, I.; Resemann, A.; Nordmann, C.; Zabret, J.; Suckau, D.; Michel, H.; Nowacyk, M. M.; Meier, T. et al.; Langer, J. D.: Top-Down Identification and Sequence Analysis of Small Membrane Proteins Using MALDI-MS/MS. Journal of the American Society for Mass Spectrometry 33 (7), pp. 1293 - 1302 (2022)

MPG.PuRe

Journal Article

Enenkel, C.; Kang, R. W.; Wilfling, F.; Ernst, O. P.: Intracellular localization of the proteasome in response to stress conditions. The Journal of Biological Chemistry 298 (7), 102083 (2022)

MPG.PuRe

Journal Article

Hollenstein, D. M.; Veis, J.; Romanov, N.; Gérecová, G.; Ogris, E.; Hartl, M.; Ammerer, G.; Reiter, W.: PP2A^Rts1 antagonizes Rck2-mediated hyperosmotic stress signaling in yeast. Microbiological Research 260, 127031 (2022)

MPG.PuRe

Journal Article

Heinz, V.; Jäckel, W.; Kaltwasser, S.; Cutugno, L.; Bedrunka, P.; Graf, A.; Reder, A.; Michalik, S.; Dhople, V. M.; Madei, M. G. et al.; Conway, M.; Lechner, M.; Riedel, K.; Bange, G.; Boyd, A.; Völker, U.; Lewis, R. J.; Marles-Wright, J.; Ziegler, C.; Pané-Farré, J.: The Vibrio vulnificus stressosome is an oxygen-sensor involved in regulating iron metabolism. Communications Biology 5, 622 (2022)

MPG.PuRe

Journal Article

Miksys, A.; Fu, L.; Madej, M. G.; Guerreiro, D. N.; Kaltwasser, S.; Conway, M.; Ejder, S.; Bruckmann, A.; Marles-Wright, J.; Lewis, R. J. et al.; O'Byrne, C.; Pané-Farré, J.; Ziegler, C.: Molecular insights into intra-complex signal transmission during stressosome activation. Communications Biology 5, 621 (2022)

MPG.PuRe

Journal Article

Kayastha, K.; Katsyv, A.; Himmrich, C.; Welsch, S.; Schuller, J. M.; Ermler, U.; Müller, V.: Structure-based electron-confurcation mechanism of the Ldh-EtfAB complex. eLife 11, e77095 (2022)

MPG.PuRe

Journal Article

Aziz, I.; Kaltwasser, S.; Kayastha, K.; Khera, R.; Vonck, J.; Ermler, U.: The molybdenum storage protein forms and deposits distinct polynuclear tungsten oxygen aggregates. Journal of Inorganic Biochemistry 234, 111904 (2022)

MPG.PuRe

Journal Article

Cruz-León, S.; Vanderlinden, W.; Müller, P.; Forster, T.; Staudt, G.; Lin, Y.-Y.; Lipfert, J.; Schwierz, N.: Twisting DNA by salt. Nucleic Acids Research (London) 50 (10), pp. 5726 - 5739 (2022)

MPG.PuRe

Journal Article

Mosalaganti, S.; Obarska-Kosinska, A.; Siggel, M.; Taniguchi, R.; Turoňová, B.; Zimmerli, C. E.; Buczak, K.; Schmidt, F. H.; Margiotta, E.; Mackmull, M.-T. et al.; Hagen, W. J. H.; Hummer, G.; Kosinski, J.; Beck, M.: AI-based structure prediction empowers integrative structural analysis of human nuclear pores. Science 376 (6598), eabm9506 (2022)

MPG.PuRe

Journal Article

Cullati, S. N.; Chaikuad, A.; Chen, J.-S.; Gebel, J.; Tesmer, L.; Zhubi, R.; Navarrete-Perea, J.; Guillen, R. X.; Gygi, S. P.; Hummer, G. et al.; Dötsch, V.; Knapp, S.; Gould, K. L.: Kinase domain autophosphorylation rewires the activity and substrate specificity of CK1 enzymes. Molecular Cell 82 (11), pp. 2006 - 2020.e8 (2022)

MPG.PuRe

Journal Article

Qiao, S.; Lee, C.-W.; Sherpa, D.; Chrustowicz, J.; Cheng, J.; Duennebacke, M.; Steigenberger, B.; Karayel, O.; Vu, D. T.; von Gronau, S. et al.; Mann, M.; Wilfling, F.; Schulman, B. A.: Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation. Nature Communications 13, 3041 (2022)

MPG.PuRe