Publications of the Max Planck Institute of Biophysics 1947 – present

Journal Article (58)

2016

Journal Article

Călinescu, O.; Linder, M.; Wöhlert, D.; Yildiz, Ö.; Kühlbrandt, W.; Fendler, K.: Electrogenic Cation Binding in the Electroneutral Na⁺/H⁺ Antiporter of Pyrococcus abyssi. The Journal of Biological Chemistry 291 (52), pp. 26786 - 26793 (2016)

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Krämer, A.; Wagner, T.; Yildiz, Ö.; Meyer-Almes, F.-J.: Crystal Structure of a Histone Deacetylase Homologue from Pseudomonas aeruginosa. Biochemistry 55 (49), pp. 6858 - 6868 (2016)

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Journal Article

Demmer, J. K.; Rupprecht, F. A.; Eisinger, M. L.; Ermler, U.; Langer, J. D.: Ligand binding and conformational dynamics in a flavin-based electron-bifurcating enzyme complex revealed by Hydrogen-Deuterium Exchange Mass Spectrometry. FEBS Letters 590 (24), pp. 4472 - 4479 (2016)

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Sousa, J. S.; Mills, D. J.; Vonck, J.; Kühlbrandt, W.: Functional asymmetry and electron flow in the bovine respirasome. eLife 5, e21290 (2016)

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Hummer, G.; Fricke, F.; Heilemann, M.: Model-independent counting of molecules in single-molecule localization microscopy. Molecular Biology of the Cell 27 (22), pp. 3637 - 3644 (2016)

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Lehnert, E.; Mao, J.; Mehdipour, A. R.; Hummer, G.; Abele, R.; Glaubitz, C.; Tampé, R.: Antigenic Peptide Recognition on the Human ABC Transporter TAP Resolved by DNP-Enhanced Solid-State NMR Spectroscopy. Journal of the American Chemical Society 138 (42), pp. 13967 - 13974 (2016)

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Feldbauer, K.; Schlegel, J.; Weissbecker, J.; Sauer, F.; Wood, P. G.; Bamberg, E.; Terpitz, U.: Optochemokine tandem for light-control of intracellular Ca²⁺. PLoS One 10 (11), e0165344 (2016)

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Schanzenbächer, C.; Sambandan, S.; Langer, J. D.; Schuman, E. M.: Nascent Proteome Remodeling following Homeostatic Scaling at Hippocampal Synapses. Neuron 92 (2), pp. 358 - 371 (2016)

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Wagner , T.; Ermler, U.; Shima, S.: The methanogenic CO₂ reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science Magazine 354 (6308), pp. 114 - 117 (2016)

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Hanus, C.; Geptin, H.; Tushev, G.; Garg, S.; Alvarez-Castelao, B.; Sambandan, S.; Kochen, L.; Hafner, A.-S.; Langer, J. D.; Schuman, E. M.: Unconventional secretory processing diversifies neuronal ion channel properties. eLife 5, e20609 (2016)

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Yihua, S.; Zhang, C.; Dingji, S.; Xiaohui, J.; Rui, J.; Peimin, H.: Effects of light quality on cell growth and psbA promoter of engineered Synechococcus sp. PCC7002. Chinese Journal of Biotechnology 32 (9), pp. 1286 - 1290 (2016)

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Klapper, S. D.; Swiersy, A.; Bamberg, E.; Busskamp, V.: Biophysical Properties of Optogenetic Tools and Their Application for Vision Restoration Approaches. Frontiers in Systems Neuroscience 10, 74 (2016)

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Upadhyay, V.; Ceh, K.; Tumulka, F.; Abele, R.; Hoffmann , J.; Langer, J. D.; Shima, S.; Ermler, U.: Molecular characterization of methanogenic N⁵-methyltetrahydromethanopterin: Coenzyme M methyltransferase. Biochimica et Biophysica Acta-Biomembranes 1858 (9), pp. 2140 - 2144 (2016)

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Wagner, T.; Kahnt, J.; Ermler, U.; Shima, S.: Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation. Angewandte Chemie International Edition in English 55 (36), pp. 10630 - 10633 (2016)

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Vögele, M.; Hummer, G.: Divergent Diffusion Coefficients in Simulations of Fluids and Lipid Membranes. The Journal of Physical Chemistry B 25 (33), pp. 8722 - 8732 (2016)

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Cossio, P.; Hummer, G.; Szabo, A.: Kinetic Ductility and Force-Spike Resistance of Proteins from Single-Molecule Force Spectroscopy. Biophysical Journal 111 (4), pp. 832 - 840 (2016)

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Mehdipour, A. R.; Hummer, G.: Cardiolipin puts the seal on ATP synthase. Proceedings of the National Academy of Sciences of the United States of America 113 (31), pp. 8568 - 8570 (2016)

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Fujishiro, T.; Bai , L.; Xu , T.; Xie , X.; Schick, M.; Kahnt, J.; Rother, M.; Hu , X.; Ermler, U.; Shima, S.: Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis. Angewandte Chemie International Edition in English 55 (33), pp. 9648 - 9651 (2016)

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Vonck, J.; Parcej, D. N.; Mills, D. J.: Structure of Alcohol Oxidase from Pichia pastoris by Cryo-Electron Microscopy. PLOS ONE 11 (7), e0159476 (2016)

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Gupta, S.; Biswas, A.; Akhter, M. S.; Krettler, C.; Reinhart, C.; Dodt, J.; Reuter, A.; Philippou, H.; Ivaskevicius, V.; Oldenburg, J.: Revisiting the mechanism of coagulation factor XIII activation and regulation from a structure/functional perspective. Scientific Reports 6, pp. 1 - 16 (2016)

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Laiyin, N.; Grell, E.; Malviya, V. N.; Xie, H.; Wang, J.; Michel, H.: Identification of the High-affinity Substrate-binding Site of the Multidrug and Toxic Compound Extrusion (MATE) Family Transporter from Pseudomonas stutzeri. The Journal of Biological Chemistry 291 (30), pp. 15503 - 15514 (2016)

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Leahy, C. T.; Murphy, R. D.; Hummer, G.; Rosta, E.; Buchete, N.-V.: Coarse Master Equations for Binding Kinetics of Amyloid Peptide Dimers. The Journal of Physical Chemistry Letters 7 (14), pp. 2676 - 2682 (2016)

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Covino, R.; Ballweg, S.; Stordeur, C.; Michaelis, J. B.; Puth, K.; Wernig, F.; Bahrami, A. H.; Ernst, A. M.; Hummer, G.; Ernst, R.: A Eukaryotic Sensor for Membrane Lipid Saturation. Molecular Cell 63 (1), pp. 49 - 59 (2016)

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Hummer, G.; Wikström, M.: Molecular simulation and modeling of complex I. Biochimica et Biophysica Acta, Bioenergetics 1857 (7), pp. 915 - 921 (2016)

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Wagner, T.; Ermler, U.; Shima, S.: MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode. Scientific Reports 6, 28226 (2016)

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Brandt, T.; Cavellini, L.; Kühlbrandt, W.; Cohen, M. M.: A mitofusin-dependent docking ring complex triggers mitochondrial fusion in vitro. eLife 5, e14618 (2016)

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Bazzone, A.; Madej, G. M.; Kaback, H. R.; Fendler, K.: pH Regulation of Electrogenic Sugar/H⁺ Symport in MFS Sugar Permeases. PLoS One 11 (5), e0156392 (2016)

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Sugawa, M.; Okazaki, K.-i.; Kobayashi, M.; Matsui, T.; Hummer, G.; Masaike, T.; Nishizaka, T.: F₁-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements. Proceedings of the National Academy of Sciences of the United States of America 113 (21), pp. E2916 - E2924 (2016)

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Albarracin, V. H.; Kraiselburd, I.; Bamann, C.; Wood, P. G.; Bamberg, E.; Farias, M. E.; Gärtner, W.: Functional Green-Tuned Proteorhodopsin from Modern Stromatolites. PLoS One 11 (5), e0154962 (2016)

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Weidenweber, S.; Marmulla, R.; Ermler, U.; Harder, J.: X-ray structure of linalool dehydratase/isomerase from Castellaniella defragrans reveals enzymatic alkene synthesis. FEBS Letters 590 (9), pp. 1375 - 1383 (2016)

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Safarian, S.; Rajendran, C.; Müller, H.; Preu, J.; Langer, J. D.; Ovchinnikov, S.; Hirose, T.; Kusumoto, T.; Sakamoto, J.; Michel, H.: Structure of a bd oxidase indicates similar mechanisms for membrane-integrated oxygen reductases. Science 352 (6285), pp. 583 - 586 (2016)

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Gushchin, I.; Shevchenko, V.; Polovinkin, V.; Borshchevskiy, V.; Buslaev, P.; Bamberg, E.; Gordeliy, V.: Structure of the light-driven sodium pump KR2 and its implications for optogenetics. The FEBS Journal 283 (7), pp. 1232 - 1238 (2016)

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Jia, X.-H.; Zhang, C.-L.; Shi, D.-J.; Zhuang, M.-M.; Wang, X.; Jia, R.; Zhang, Z.-Y.; Huang, J.; Sun, Y.-H.; Qian, W.-Y. et al.; Peng, G.-H.; He, P.-M.: Oral administration of Anabaena-expressed VP28 for both drug and food against white spot syndrome virus in shrimp. Journal of applied phycology 28 (2), pp. 1001 - 1009 (2016)

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Srinivasan, L.; Baars, T. L.; Fendler, K.; Michel, H.: Functional characterization of solute carrier (SLC) 26/sulfate permease (SulP) proteins in membrane mimetic systems. Biochimica et Biophysica Acta-Biomembranes 1858 (4), pp. 698 - 705 (2016)

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Journal Article

Best, R.; Hummer, G.: Microscopic interpretation of folding ϕ-values using the transition path ensemble. Proceedings of the National Academy of Sciences of the United States of America 113 (12), pp. 3263 - 3268 (2016)

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Journal Article

Boll, M.; Einsle, O.; Ermler, U.; Kroneck, P. M.H.: Structure and Function of the Unusual Tungsten Enzymes Acetylene Hydratase and Class II Benzoyl-Coenzyme A Reductase. Journal of Molecular Microbiology and Biotechnology 26 (1-3), pp. 119 - 137 (2016)

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Boll, M.; Kung, J. W.; Ermler, U.; Martins, B. M.; Buckel, W.: Fermentative Cyclohexane Carboxylate Formation in Syntrophus aciditrophicus. Journal of Molecular Microbiology and Biotechnology 26 (1-3), pp. 165 - 179 (2016)

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Journal Article

Rabus, R.; Boll , M.; Heider, J.; Meckenstock, R. U.; Buckel, W.; Einsle, O.; Ermler, U.; Golding, B. T.; Gunsalus, R. P.; Kroneck, P. M.H. et al.; Krüger, M.; Lueders, T.; Martins, B. M.; Musat, F.; Richnow, H. H.; Schink, B.; Seifert, J.; Szaleniec, M.; Treude, T.; Ullmann, G. M.; Vogt, C.; von Bergen, M.; Wilkes, H.: Anaerobic Microbial Degradation of Hydrocarbons: From Enzymatic Reactions to the Environment. Journal of Molecular Microbiology and Biotechnology 26 (1-3), pp. 5 - 28 (2016)

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Journal Article

Brandt, K.; Müller, D. B.; Hoffmann, J.; Langer, J. D.; Brutschy, B.; Morgner, N.; Müller, V.: Stoichiometry and deletion analyses of subunits in the heterotrimeric F-ATP synthase c ring from the acetogenic bacterium Acetobacterium woodii. The FEBS Journal 283 (3), pp. 510 - 520 (2016)

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Journal Article

Kohlstädt, M.; Buschmann, S.; Xie, H.; Resemann, A.; Warkentin, E.; Langer, J. D.; Michel, H.: Identification and characterization of the novel subunit CcoM in the cbb₃-cytochrome c oxidase from Pseudomonas stutzeri ZoBell. mBio 7 (7), pp. 1 - 9 (2016)

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Joedicke, L.; Trenker, R.; Langer, J. D.; Michel, H.; Preu, J.: Cell-free synthesis of isotopically labelled peptide ligands for the functional characterization of G protein-coupled receptors. FEBS Open Bio 6 (1), pp. 90 - 102 (2016)

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Journal Article

Chaudhury, P.; Neiner, T.; D'Imprima, E.; Banerjee, A.; Reindl, S.; Ghosh, A.; Arvai, A. S.; Mills, D. J.; van der Does, C.; Tainer, J. A. et al.; Vonck, J.; Albers, S.: The nucleotide-dependent interaction of FlaH and FlaI isessential for assembly and function of the archaellum motor. Molecular Microbiology 99 (4), pp. 674 - 685 (2016)

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D'Imprima, E.; Mills, D. J.; Parey, K.; Brandt, U.; Kühlbrandt, W.; Zickermann, V.; Vonck, J.: Cryo-EM structure of respiratory complex I reveals a link to mitochondrial sulfur metabolism. Biochimica et Biophysica Acta (BBA) - Bioenergetics 1857 (12), pp. 1935 - 1942 (2016)

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Journal Article

Daum, B.; Auerswald, A.; Gruber, T.; Hause, G.; Balbach, J.; Kühlbrandt, W.; Meister, A.: Supramolecular organization of the human N-BAR domain in shaping the sarcolemma membrane. Journal of Structural Biology 194 (3), pp. 375 - 382 (2016)

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Journal Article

Gold, V.; Kudryashev, M.: Recent progress in structure and dynamics of dual-membrane-spanning bacterial nanomachines. Current Opinion in Structural Biology 39, pp. 1 - 7 (2016)

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Hahn, A.; Parey, K.; Bublitz, M.; Mills, D. J.; Zickermann, V.; Vonck, J.; Kühlbrandt, W.; Meier, T.: Structure of a Complete ATP Synthase Dimer Reveals the Molecular Basis of Inner Mitochondrial Membrane Morphology. Molecular Cell 63, pp. 1 - 12 (2016)

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Journal Article

Kao, W.-C.; Kleinschroth, T.; Nitschke, W.; Baymann, F.; Neehaul, Y.; Hellwig, P.; Richers, S.; Vonck, J.; Bott, M.; Hunte, C.: The obligate respiratory supercomplex from Actinobacteria. Biochimica et Biophysica Acta, Bioenergetics 1857, pp. 1705 - 1714 (2016)

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Journal Article

Kühlbrandt, W.: Three in a row - how sodium ions cross the channel. The EMBO Journal 35 (8), pp. 793 - 795 (2016)

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Kühlbrandt, W.; Davies, K. M.: Rotary ATPases: A New Twist to an Ancient Machine. Trends in biochemical sciences 41 (1), pp. 106 - 116 (2016)

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Mühleip, A. W.; Joos, F.; Wigge, C.; Frangakis, A. S.; Kühlbrandt, W.; Davies, K. M.: Helical arrays of U-shaped ATP synthase dimers form tubular cristae in ciliate mitochondria. Proceedings of the National Academy of Sciences of the United States of America 113 (30), pp. 8442 - 8447 (2016)

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Parey, K.; Fielding, A.; Sörgel, M.; Rachel, R.; Huber, H.; Ziegler, C.; Rajendran, C.: In meso crystal structure of a novel membrane-associated octaheme cytochrome c from the Crenarchaeon Ignicoccus hospitalis. FEBS Journal 283 (20), pp. 3807 - 3820 (2016)

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Rhinow, D.: Towards an optimum design for thin film phase plates. Ultramicroscopy 160, pp. 1 - 6 (2016)

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Journal Article

Salzer, R.; D'Imprima, E.; Gold, V. A. M.; Rose, I.; Drechsler, M.; Vonck, J.; Averhoff, B.: Topology and Structure/Function Correlation of Ring- and Gate-forming Domains in the Dynamic Secretin Complex of Thermus thermophilus. The Journal of Biological Chemistry 291 (28), pp. 14448 - 14456 (2016)

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Salzer, R.; Kern, T.; Joos, F.; Averhoff, B.: The Thermus thermophilus comEA/comEC operon is associated with DNA binding and regulation of the DNA translocator and type IV pili. Environmental Microbiology 18 (1), pp. 65 - 74 (2016)

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Schuchmann, K.; Vonck, J.; Müller, V.: A bacterial hydrogen-dependent CO₂ reductase forms filamentous structures. FEBS Journal 283 (7), pp. 1311 - 1322 (2016)

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Journal Article

Subramaniam, S.; Kühlbrandt, W.; Henderson, R.: CryoEM at IUCrJ: a new era. International Union of Crystallography Journal (IUCrJ) 3 (1), pp. 3 - 7 (2016)

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Turakhiya, U.; von der Malsburg, K.; Gold, V. A. M.; Guiard, B.; Chacinska, A.; van der Laan, M.; Ieva, R.: Protein Import by the Mitochondrial Presequence Translocase in the Absence of a Membrane Potential. J. Mol. Biol. 428 (6), pp. 1041 - 1052 (2016)

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Journal Article

van Pee, K.; Mulvihill, E.; Müller, D. J.; Yildiz, Ö.: Unraveling the Pore-Forming Steps of Pneumolysin from Streptococcus pneumoniae. Nano Letters 16 (12), pp. 7915 - 7924 (2016)

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Thesis - PhD (9)

2016

Thesis - PhD

Xin, S.: Structural and functional study on Aquifex aeolicus F₁F₀-ATP synthase. Dissertation, 151 pp., Fachbereich Biochemie, Chemie, Pharmazie der Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2016)

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Thesis - PhD

Allegretti, M.: Structural characterization of macromolecular complexes by single-particle cryo-EM. Dissertation, Goethe-Universität, Frankfurt am Main (2016)

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Thesis - PhD

Schulz, S.: Structural and functional characterization of the rotor rings from a Fusobacterium F-type and a Burkholderia N-type rotary ATPase. Dissertation, 244 pp., Goethe-Universität, Frankfurt am Main (2016)

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Thesis - PhD

Blum, T.: Electron cryo-tomography of macromolecular membrane proteins. Dissertation, Goethe-Universität, Frankfurt am Main (2016)

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Thesis - PhD

Jödicke, L.: Structural and functional characterisation of peptide-ligand G protein coupled receptors – Examples from the chemoattractant cluster. Dissertation, 140 pp., Goethe Universität - Fachbereich Biochemie, Frankfurt am Main (2016)

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Thesis - PhD

Kaltwasser, S.: Structural characterization of stressosome complexes by single-particle cryo-electron microscopy. Dissertation, Goethe-Universität, Frankfurt am Main (2016)

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Thesis - PhD

Laiyin, N.: Structural and Functional Characterization of NorM_PS – a multidrug and toxic compound extrusion (MATE) transporter from Pseudomonas stutzeri. Dissertation, 147 pp., Tianjin University, Tianjin Province, China (2016)

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Thesis - PhD

Waclawska, I.: Dynamics in stress-regulated betaine transport and role of pathogen-relevant choline transport. Dissertation, Goethe-Universität, Frankfurt am Main (2016)

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Thesis - PhD

Wilkes, M.: Single-particle cryo-EM structures of oligomeric membrane protein complexes. Dissertation, 159 pp., Goethe-Universität, Frankfurt am Main (2016)

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Thesis - Master (6)

2016

Thesis - Master

Schieferdecker, A.: Site Directed Crosslinking Studies on the SeCitS Transport Mechanism. Master, 77 pp., Technische Universität, Darmstadt (2016)

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Thesis - Master

Hielkema, L.: A structural study of the AcrB protein complex by single particle cryo-EM. Master, 36 pp., University of Groningen, Groningen (2016)

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Thesis - Master

Kappenstein, M. R.: Using GCaMP to optically monitor channelrhodopsin induced calcium flux in yeast. Master, 51 pp., Johann Wolfgang Goethe-Universität, Frankfurt am Main (2016)

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Thesis - Master

Lazari, T.: Charakterisierung eukaryotischer Membranproteine. Master, 75 pp., Institut für Molekulare Biophysik, Johannes Gutenberg Universität, Mainz (2016)

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Thesis - Master

Mikocziova, I.: Putative Amino-Acid Transporters from Thermophilic Eukaryotes. Master, 33 pp., University of Aberdeen, Aberdeen (2016)

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Thesis - Master

Selina, K.: Funktionelle und strukturelle Charakterisierung von SLC Transportern in HEK-293-Zellen. Master, 67 pp., Technische Universität, Fachbereich Biologie, Darmstadt (2016)

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Thesis - Bachelor (4)

2016

Thesis - Bachelor

Matzner, L.: Charakterisierung des Citrattransporters SeCitS - Bestimmung von Bindungsaffinitäten mittels ITC und Kristallisation funktioneller Mutanten. Bachelor, 47 pp., Goethe Universität, Frankfurt am Main (2016)

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Thesis - Bachelor

Kavakli, S.: Untersuchung der Natrium-Ionen-Bindung In Krokinobacter Eikastus Rhodopsin 2. Bachelor, 56 pp., Fachbereich Biochemie, Goethe-Universität Frankfurt, Frankfurt am Main (2016)

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Thesis - Bachelor

Friedl, J.: Rekonstitution von Channelopsin-2 mit modifizierten Retinalen. Bachelor, 40 pp., Fachbereich Biochemie, Goethe-Universität Frankfurt, Frankfurt am Main (2016)

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Thesis - Bachelor

Quirnheim Pais, D.: Evaluation und Anwendung eines Verfahrens zur Hochdruckgefrierung in der Proteinkristallisation. Bachelor, 70 pp., Frankfurt University of Applied Sciences, FB2: Bioverfahrenstechnik, Frankfurt am Main (2016)

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