Max Planck Institute of Biophysics

Publications of the Max Planck Institute of Biophysics 1947 – present

Journal Article (53)

2010

Journal Article

Damaghi, M.; Sapra, K. T.; Köster, S.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: Dual energy landscape: The functional state of the β-barrel outer membrane protein G molds its unfolding energy landscape. Proteomics 10 (23), pp. 4151 - 4162 (2010)

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Journal Article

Khafizov, K.; Staritzbichler, R.; Stamm, M.; Forrest, L. R.: A Study of the Evolution of Inverted-Topology Repeats from LeuT-Fold Transporters Using AlignMe. Biochemistry 49 (50), pp. 10702 - 10713 (2010)

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Journal Article

Liao, P.-N.; Holleboom, C.-P.; Wilk, L.; Kühlbrandt, W.; Walla, P. J.: Correlation of Car S₁→ Chl with Chl → Car S₁ Energy Transfer Supports the Excitonic Model in Quenched Light Harvesting Complex II. The Journal of Physical Chemistry B 114 (47), pp. 15650 - 15655 (2010)

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Journal Article

Pogoryelov, D.; Krah, A.; Langer, J. D.; Yildiz, Ö.; Faraldo-Gómez, J. D.; Meier, T.: Microscopic rotary mechanism of ion translocation in the F_o complex of ATP synthases. Nature Chemical Biology 6, pp. 891 - 899 (2010)

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Journal Article

Scharf, L.; Li, N.-S.; Hawk, A. J.; Garzón, D.; Zhang, T.; Fox, L. M.; Kazen, A. R.; Shah, S.; Haddadian, E. J.; Gumperz, J. E. et al.; Saghatelian, A.; Faraldo-Gómez, J. D.: The 2.5 Å Structure of CD1c in Complex with a Mycobacterial Lipid Reveals an Open Groove Ideally Suited for Diverse Antigen Presentation. Immunity 33, pp. 853 - 862 (2010)

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Journal Article

Hoffmann, J.; Sokolova, L.; Preiss, L.; Hicks, D. B.; Krulwich, T. A.; Morgner, N.; Wittig, I.; Schägger, H.; Meier, T.; Brutschy, B.: ATP synthases: cellular nanomotors characterized by LILBID mass spectrometry. Physical Chemistry Chemical Physics 12 (41), pp. 13375 - 13382 (2010)

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Journal Article

Marcia, M.; Langer, J. D.; Parcej, D.; Vogel, V.; Peng, G.; Michel, H.: Characterizing a monotopic membrane enzyme. Biochemical, enzymatic and crystallization studies on Aquifex aeolicus sulfide:quinone oxidoreductase. Biochimica et Biophysica Acta-Biomembranes 1798 (11), pp. 2114 - 2123 (2010)

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Journal Article

Rhinow, D.; Chizhik, I.; Baumann, R.-P.; Noll, F.; Hampp, N.: Crystallinity of Purple Membranes Comprising the Chloride-Pumping Bacteriorhodopsin Variant D85T and Its Modulation by pH and Salinity. The Journal of Physical Chemistry B 114 (46), pp. 15424 - 15428 (2010)

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Journal Article

Parey, K.; Warkentin, E.; Kroneck, P. M.; Ermler, U.: Reaction Cycle of the Dissimilatory Sulfite Reductase from Archaeoglobus fulgidus. Biochemistry 49 (41), pp. 8912 - 8921 (2010)

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Journal Article

Verhoefen, M.-K.; Bamann, C.; Blöcher, R.; Förster, U.; Bamberg, E.; Wachtveitl, J.: The Photocycle of Channelrhodopsin-2: Ultrafast Reaction Dynamics and Subsequent Reaction Steps. ChemPhysChem 11 (14), pp. 3113 - 3122 (2010)

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Journal Article

Bamann, C.; Nagel, G.; Bamberg, E.: Microbial rhodopsins in the spotlight. Current Opinion in Neurobiology 20 (5), pp. 610 - 616 (2010)

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Journal Article

Brust, D.; Daum, B.; Breunig, C.; Hamann, A.; Kühlbrandt, W.; Osiewacz, H. D.: Cyclophilin D links programmed cell death and organismal aging in Podospora anserina. Aging Cell 9 (5), pp. 761 - 775 (2010)

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Journal Article

Hofmann, B.; Maybeck, V.; Eick, S.; Meffert, S.; Ingebrandt, S.; Wood, P.; Bamberg, E.; Offenhäusser, A.: Light induced stimulation and delay of cardiac activity. Lab on a Chip 10 (19), pp. 2588 - 2596 (2010)

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Journal Article

Leone, V.; Krah, A.; Faraldo-Gómez, J. D.: On the Question of Hydronium Binding to ATP-Synthase Membrane Rotors. Biophysical Journal 99 (7), pp. L53 - L55 (2010)

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Journal Article

Ziegler, C.; Bremer, E.; Krämer, R.: The BCCT family of carriers: from physiology to crystal structure. Molecular Microbiology 78 (1), pp. 13 - 34 (2010)

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Journal Article

Anselmi, C.; Grininger, M.; Gipson, P.; Faraldo-Gómez, J. D.: Mechanism of Substrate Shuttling by the Acyl-Carrier Protein within the Fatty Acid Mega-Synthase. Journal of the American Chemical Society 132 (35), pp. 12357 - 12364 (2010)

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Journal Article

Carpaneto, A.; Koepsell, H.; Bamberg, E.; Hedrich, R.; Geiger, D.: Sucrose- and H⁺-Dependent Charge Movements Associated with the Gating of Sucrose Transporter ZmSUT1. PLoS One 5 (9), e12605 (2010)

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Journal Article

Porrati, F.; Sachser, R.; Strauss, M.; Andrusenko, I.; Gorelik, T.; Kolb, U.; Bayarjargal, L.; Winkler, B.; Huth, M.: Artificial granularity in two-dimensional arrays of nanodots fabricated by focused-electron-beam-induced deposition. Nanotechnology 21 (37), 375302 (2010)

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Journal Article

Schulz, P.; Werner, J.; Stauber, T.; Henriksen, K.; Fendler, K.: The G215R Mutation in the Cl^-/H⁺-Antiporter ClC-7 Found in ADO II Osteopetrosis Does Not Abolish Function but Causes a Severe Trafficking Defect. PLoS One 5 (9), e12585 (2010)

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Journal Article

Korkmaz-Özkan, F.; Köster, S.; Kühlbrandt, W.; Mäntele, W.; Yildiz, Ö.: Correlation between the OmpG Secondary Structure and Its pH-Dependent Alterations Monitored by FTIR. Journal of Molecular Biology 401 (1), pp. 56 - 67 (2010)

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Journal Article

Preiss, L.; Yildiz, Ö.; Hicks, D. B.; Krulwich, T. A.; Meier, T.: A New Type of Proton Coordination in an F₁F_o-ATP Synthase Rotor Ring. PLoS Biology 8 (8), e1000443 (2010)

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Journal Article

Garcia-Celma, J. J.; Ploch, J.; Smirnova, I.; Kaback, H. R.; Fendler, K.: Delineating Electrogenic Reactions during Lactose/H⁺ Symport. Biochemistry 49 (29), pp. 6115 - 6121 (2010)

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Journal Article

Hunte, C.; Zickermann, V.; Brandt, U.: Functional Modules and Structural Basis of Conformational Coupling in Mitochondrial Complex I. Science 329 (6509), pp. 448 - 451 (2010)

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Journal Article

Buschmann, S.; Warkentin, E.; Xie, H.; Langer, J. D.; Ermler, U.; Michel, H.: The Structure of cbb₃ Cytochrome Oxidase Provides Insights into Proton Pumping. Science 329 (5989), pp. 327 - 330 (2010)

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Journal Article

Liao, P.-N.; Bode, S.; Wilk, L.; Hafi, N.; Walla, P. J.: Correlation of electronic carotenoid-chlorophyll interactions and fluorescence quenching with the aggregation of native LHC II and chlorophyll deficient mutants. Chemical Physics 373 (1-2), pp. 50 - 55 (2010)

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Journal Article

Muster, B.; Kohl, W.; Wittig, I.; Strecker, V.; Joos, F.; Haase, W.; Bereiter-Hahn, J.; Busch, K.: Respiratory Chain Complexes in Dynamic Mitochondria Display a Patchy Distribution in Life Cells. PLoS One 5 (7), e11910 (2010)

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Journal Article

Rajendran, C.; Ermler, U.; Ludwig, B.; Michel, H.: Structure at 1.5 Å resolution of cytochrome c₅₅₂ with its flexible linker segment, a membrane-anchored protein from Paracoccus denitrificans. Acta Crystallographica. Section D: Biological Crystallography (Copenhagen) D66 (7), pp. 850 - 854 (2010)

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Journal Article

Schranz, M.; Baumann, R.-P.; Rhinow, D.; Hampp, N.: Dynamics of Bacteriorhodopsin in Solid-Supported Purple Membranes Studied with Tapping-Mode Atomic Force Microscopy. The Journal of Physical Chemistry B 114 (27), pp. 9047 - 9053 (2010)

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Journal Article

Wischgoll, S.; Demmer, U.; Warkentin, E.; Günther, R.; Boll, M.; Ermler, U.: Structural Basis for Promoting and Preventing Decarboxylation in Glutaryl-Coenzyme A Dehydrogenases. Biochemistry 49 (25), pp. 5350 - 5357 (2010)

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Journal Article

Krah, A.; Pogoryelov, D.; Langer, J. D.; Bond, P. J.; Meier, T.; Faraldo-Gómez, J. D.: Structural and energetic basis for H⁺ versus Na⁺ binding selectivity in ATP synthase F_o rotors. Biochimica et Biophysica Acta: BBA 1797, pp. 763 - 772 (2010)

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Journal Article

Kumar, J.; Sreeramulu, S.; Schmidt, T. L.; Richter, C.; Vonck, J.; Heckel, A.; Glaubitz, C.; Schwalbe, H.: Prion Protein Amyloid Formation Involves Structural Rearrangements in the C-Terminal Domain. Chembiochem 11 (9), pp. 1208 - 1213 (2010)

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Journal Article

Haferkamp, S.; Haase, W.; Pascal, A. A.; van Amerongen, H.; Kirchhoff, H.: Efficient Light Harvesting by Photosystem II Requires an Optimized Protein Packing Density in Grana Thylakoids. The Journal of Biological Chemistry 285 (22), pp. 17020 - 17028 (2010)

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Journal Article

Rhinow, D.; Vonck, J.; Schranz, M.; Beyer, A.: Ultrathin conductive carbon nanomembranes as support ﬁlms for structural analysis of biological specimens. Physical Chemistry Chemical Physics 12, pp. 4345 - 4350 (2010)

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Journal Article

Zimmermann, U.; Rüger, S.; Shapira, O.; Westhoff, M.; Wegner, L.H.; Reuss, R.; Gessner, P.; Zimmermann, G.; Israeli, Y.; Zhou, A. et al.; Schwartz, A.; Bamberg, E.; Zimmermann, D.: Effects of environmental parameters and irrigation on the turgor pressure of banana plants measured using the non-invasive, online monitoring leaf patch clamp pressure probe. Plant Biology 12 (3), pp. 424 - 436 (2010)

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Journal Article

Damaghi, M.; Bippes, C.; Köster, S.; Yildiz, Ö.; Mari, S. A.; Kühlbrandt, W.; Muller, D. J.: pH-Dependent Interactions Guide the Folding and Gate the Transmembrane Pore of the β-Barrel Membrane Protein OmpG. Journal of Molecular Biology 397 (4), pp. 878 - 882 (2010)

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Journal Article

Daum, B.; Nicastro, D.; Austin II, J.; McIntosh, J. R.; Kühlbrandt, W.: Arrangement of Photosystem II and ATP Synthase in Chloroplast Membranes of Spinach and Pea. The Plant Cell 22 (4), pp. 1299 - 1312 (2010)

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Journal Article

Gu, Q.; Du, H.; Ma, C.; Fotis, H.; Wu, B.; Huang, C.; Schwarz, W.: Effects of α-Asarone on the Glutamate Transporter EAAC1 in Xenopus Oocytes. Planta Medica 75 (1), pp. 595 - 598 (2010)

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Journal Article

Hoffmann, J.; Aslimovska, L.; Bamann, C.; Glaubitz, C.; Bamberg, E.; Brutschy, B.: Studying the stoichiometries of membrane proteins by mass spectrometry: microbial rhodopsins and a potassium ion channel. Physical Chemistry Chemical Physics 12 (14), pp. 3480 - 3485 (2010)

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Journal Article

Marcia, M.; Ermler, U.; Peng, G.; Michel, H.: A new structure-based classification of sulfide:quinone oxidoreductases. Proteins: Structure, Function, and Bioinformatics 78 (5), pp. 1073 - 1083 (2010)

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Journal Article

Schweikhard, E. S.; Kuhlmann, S. I.; Kunte, H.-J.; Grammann, K.; Ziegler, C. M.: Structure and Function of the Universal Stress Protein TeaD and its Role in Regulating the Ectoine Transporter TeaABC of Halomonas elongata DSM 2581^T. Biochemistry 49 (10), pp. 2194 - 2204 (2010)

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Journal Article

Zhao, G.; Johnson, M. C.; Schnell, J. R.; Kanaoka, Y.; Haase, W.; Irikura, D.; Lam, B. K.; Schmidt-Krey, I.: Two-dimensional crystallization conditions of human leukotriene C₄ synthase requiring adjustment of a particularly large combination of specific parameters. Journal of Structural Biology 169 (3), pp. 450 - 454 (2010)

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Journal Article

Dobrynin, K.; Abdrakhmanova, A.; Richers, S.; Hunte, C.; Kerscher, S.; Brandt, U.: Characterization of two different acyl carrier proteins in complex I from Yarrowia lipolytica. Biochimica et Biophysica Acta, Bioenergetics 1797 (2), pp. 152 - 159 (2010)

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Journal Article

Mari, S. A.; Köster, S.; Bippes, C. A.; Yildiz, Ö.; Kühlbrandt, W.; Muller, D. J.: pH-Induced Conformational Change of the β-Barrel-Forming Protein OmpG Reconstituted into Native E. coli Lipids. Journal of Molecular Biology 396 (3), pp. 610 - 616 (2010)

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Journal Article

Nack, M.; Radu, I.; Gossing, M.; Bamann, C.; Bamberg, E.; Fischer von Mollard, G.; Heberle, J.: The DC gate in Channelrhodopsin-2: crucial hydrogen bonding interaction between C128 and D156. Photochemical & Photobiological Sciences 9 (2), pp. 194 - 198 (2010)

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Journal Article

Bamann, C.; Gueta, R.; Kleinlogel, S.; Nagel, G.; Bamberg, E.: Structural Guidance of the Photocycle of Channelrhodopsin-2 by an Interhelical Hydrogen Bond. Biochemistry 49 (2), pp. 267 - 278 (2010)

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Journal Article

Herz, K.; Rimon, A.; Olkhova, E.; Kozachkov, L.; Padan, E.: Transmembrane Segment II of NhaA Na⁺/H⁺ Antiporter Lines the Cation Passage, and Asp⁶⁵ Is Critical for pH Activation of the Antiporter. The Journal of Biological Chemistry 285 (3), pp. 2211 - 2220 (2010)

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Journal Article

Clason, T.; Ruiz, T.; Schägger, H.; Peng, G.; Zickermann, V.; Brandt, U.; Michel, H.; Radermacher, M.: The structure of eukaryotic and prokaryotic complex I. Journal of Structural Biology 169 (1), pp. 81 - 88 (2010)

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Journal Article

Gipson, P.; Mills, D. J.; Wouts, R.; Grininger, M.; Vonck, J.; Kühlbrandt, W.: Direct structural insight into the substrate-shuttling mechanism of yeast fatty acid synthase by electron cryomicroscopy. Proceedings of the National Academy of Sciences of the United States of America 107 (20), pp. 9164 - 9169 (2010)

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Journal Article

Krah, A.; Pogoryelov, D.; Meier, T.; Faraldo-Gómez, J. D.: On the Structure of the Proton-Binding Site in the F_o Rotor of Chloroplast ATP Synthases. Journal of Molecular Biology 395, pp. 20 - 27 (2010)

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Journal Article

MacMillan, F.; Lange, C.; Bawn, M.; Hunte, C.: Resolving the EPR Spectra in the Cytochrome bc₁ Complex from Saccharomyces cerevisiae. Applied Magnetic Resonance 37 (1-4), 305, pp. 305 - 316 (2010)

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Journal Article

Müller, V.; Pisa, K. Y.; Vonck, J.: ATP-Synthase der Archäen - Neue Einblicke in die Struktur und Funktion eines Energiewandlers. Biospektrum 1, pp. 19 - 21 (2010)

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Journal Article

Schulze, S.; Köster, S.; Geldmacher, U.; Terwisscha van Scheltinga, A. C.; Kühlbrandt, W.: Structural basis of Na⁺-independent and cooperative substrate/product antiport in CaiT. Nature 467, pp. 233 - 236 (2010)

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Journal Article

Terpitz, U.; Zimmermann, D.: Isolation of guard cells from fresh epidermis using a piezo-power micro-dissection system with vibration-attenuated needles. Biotechniques 48 (1), pp. 68 - 70 (2010)

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Thesis - PhD (8)

2010

Thesis - PhD

Spitz, J.: Elektrophysiologische Untersuchung der Spannungsabhängigkeit und Kinetik der lichtaktivierten Leitfähigkeit von Channelrhodopsin-2. Dissertation, Goethe-Universität, Frankfurt am Main (2010)

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Thesis - PhD

Marcia, M.: Functional and Structural Characterization of Aquifex aeolicus sulfide:quinone oxidoreductase. Dissertation, Goethe University, Frankfurt am Main, Germany (2010)

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Thesis - PhD

Madej, M. G.: Biochemical, Structural and Functional Characterization of Diheme-Containing Succinate:Quinone Reductase (SQR) from Bacillus licheniformis. Dissertation, Goethe University, Frankfurt am Main, Germany (2010)

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Thesis - PhD

Schulz, P.: Elektrophysiologische Charakterisierung des lysosomalen Cl^-/H⁺-Antiporters ClC-7 mit Hilfe der SSM-Technik. Dissertation, Goethe University, Frankfurt am Main, Germany (2010)

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Thesis - PhD

Nyola, A.: Thermodynamic and kinetic characterisation of the interaction between mitochondrial cytochrome bc₁ complex and cytochrome c and implications for transient binding and electron transfer. Dissertation, Goethe University, Frankfurt am Main, Germany (2010)

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Thesis - PhD

Kumari, P.: High-resolution cryo-electron microscopy study of structure and dynamics of yeast fatty acid synthase by single particle analysis. Dissertation, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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Thesis - PhD

Goswami, D.: Heterogolous Production and Characterization of Selected Secondary Active Transporters from the CDF, KUP, MOP, FNT, RhtB and SulP Families. Dissertation, 126 pp., Goethe University, Frankfurt am Main, Germany (2010)

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Thesis - PhD

Spielmann, A. W.: Biophysikalische Charakterisierung von endogenen Ionenkanälen (P2X7, TRPV) in humanen Mastzellen. Dissertation, 251 pp., Fachbereich Physik, Johann Wolfgang Goethe-Universität Frankfurt, Frankfurt am Main (2010)

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Thesis - Diploma (15)

2010

Thesis - Diploma

Mamaeva, N.: Elektrophysiologische Charakterisierung des bakteriellen Nitrittransporters NirC. Diploma, Technische Universität Darmstadt, Darmstadt, Germany (2010)

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Thesis - Diploma

Prill, S.: Elektrofusion von Escherichia coli zur biophysikalischen Charakterisierung prokaryotischer Membranproteine. Diploma, 87 pp., Lehrstuhl für Biotechnologie und Biophysik, Universität Würzburg, Würzburg (2010)

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Thesis - Diploma

Gökbuget, D.: Charakterisierung monoklonaler anti-Channelrhodopsin-2 Antikörpern. Diploma, 68 pp., Goethe University, Frankfurt am Main (2010)

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Thesis - Diploma

Kleinschmidt, U.: Transporter-Assays auf festkörperunterstützten Membranen - Etablierung des Saccharomyces-Expressionssystems. Diploma, 95 pp., Technische Hochschule, Darmstadt (2010)

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Thesis - Diploma

Bahman, O.: Topologiebestimmung und Expressionsstudien an zwei Na⁺/H⁺ Antiportern aus der NhaP-Familie. Diploma, 82 pp., Fachhochschule Gießen-Friedberg, Gießen (2010)

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Thesis - Diploma

Gärtner, R. M.: Untersuchung des Substrat-Transportweges im Glycinbetain-Transporter BetP aus Corynebacterium glutamicum. Diploma, Technische Universität, Darmstadt (2010)

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Thesis - Diploma

Turaev, D.: The Importance of Glomerular Activation Patterns for Odor Discrimination in Mice and the Behavioral Training of CNGA4-/- Mice in a Completely Automated Olfactometer. Diploma, Fakultät für Biowissenschaften der Ruprecht-Karls-Universität Heidelberg, Heidelberg (2010)

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Thesis - Diploma

Rämisch, S.: Structural and functional characterisation of a putative nitrite transporter from Salmonella typhimurium. Diploma, Universität Potsdam, Potsdam, Germany (2010)

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Thesis - Diploma

Becker, L. C. A.: Entwicklung eines lichtgesteuerten Kanalproteins und phänotypische Analyse der nativen Funktion von OmpG. Diploma, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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Thesis - Diploma

Bluhme, N.: Studies on the Structure and Function of the Enzyme Violaxanthin De-Epoxidase. Diploma, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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Thesis - Diploma

Holländer, K. M.: Strukturelle Charackterisierung ausgewählter archaealer Na⁺/H⁺-Antiporter. Diploma, Fachhochschule Gießen-Friedberg, Gießen (2010)

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Thesis - Diploma

Schießl, S.-V.: Untersuchungen zu den Prozessen des nicht-photochemischen Löschens von Anregungsenergie in Pflanzen. Diploma, Johann Wolfgang Goethe Universität, Frankfurt am Main (2010)

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Thesis - Diploma

Schulz, S.: Biochemische Untersuchungen zur Ionenspezifität bakterieller Rotor Ringe aus F₁F₀-ATP-Synthasen. Diploma, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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Thesis - Diploma

Stamm, M.: Design and Testing of Membrane Protein Sequence Alignment Tools. Diploma, 98 pp., Goethe University, Frankfurt am Main (2010)

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Thesis - Diploma

Waclawska, I.: Untersuchung von Struktur und Funktion von eukaryotischen Betain-Transportern aus der BCCT- und NSS-Familie. Diploma, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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Thesis - Master (3)

2010

Thesis - Master

Ganesan, S.: Predicting the 3-D structure of the human glucose transporter hSGLT1 and norepinephrine neurotransmitter transporter NET by homology modeling. Master, 84 pp., Goethe-Universität, Frankfurt (2010)

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Thesis - Master

Geiss, C.: Establishment & application of a 2D-nanoLC-based mass spectrometry-coupled system for the quantitative analysis of COPI-vesicles & the synaptic plasticity of hippocampal neurons. Master, 146 pp., Justus-Liebig-Universität, Gießen, Germany (2010)

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Thesis - Master

van Putte, W.: Reconstitution of ATP-synthase dimers from Polytomella sp. for cryo-electron tomography studies. Master, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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Thesis - Bachelor (3)

2010

Thesis - Bachelor

Krautwurst, E.: Elektrophysiologische Untersuchungen zum Transportmechanismus der Lactose Permease LacY aus Escherischia coli. Bachelor, University of Applied Sciences, Frankfurt am Main, Germany (2010)

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Thesis - Bachelor

Horst, A.: Tomographie an Mitochondrienmembranen von Podospora anserina. Bachelor, 64 pp., Johann Wolfgang Goethe Universität, Frankfurt am Main (2010)

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Thesis - Bachelor

Ruther, D. E.: Produktion und Reinigung des TRAP-Transporters GluPQM aus Halomonas elongata. Bachelor, Johann Wolfgang Goethe-Universität, Frankfurt am Main (2010)

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